:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-msstatsptm'
.. highlight: bash

bioconductor-msstatsptm
=======================

.. conda:recipe:: bioconductor-msstatsptm
   :replaces_section_title:
   :noindex:

   Statistical Characterization of Post\-translational Modifications

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/MSstatsPTM.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-msstatsptm <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msstatsptm>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msstatsptm/meta.yaml>`_

   MSstatsPTM provides general statistical methods for quantitative characterization of post\-translational modifications \(PTMs\). Supports DDA\, DIA\, SRM\, and tandem mass tag \(TMT\) labeling. Typically\, the analysis involves the quantification of PTM sites \(i.e.\, modified residues\) and their corresponding proteins\, as well as the integration of the quantification results. MSstatsPTM provides functions for summarization\, estimation of PTM site abundance\, and detection of changes in PTMs across experimental conditions.


.. conda:package:: bioconductor-msstatsptm

   |downloads_bioconductor-msstatsptm| |docker_bioconductor-msstatsptm|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.4.1-0</code>,  <code>2.2.4-0</code>,  <code>2.0.0-1</code>,  <code>2.0.0-0</code>,  <code>1.4.2-1</code>,  <code>1.4.2-0</code>,  <code>1.4.0-0</code>,  <code>1.2.2-0</code>,  <code>1.0.0-2</code>,  </span></summary>
      

      ``2.4.1-0``,  ``2.2.4-0``,  ``2.0.0-1``,  ``2.0.0-0``,  ``1.4.2-1``,  ``1.4.2-0``,  ``1.4.0-0``,  ``1.2.2-0``,  ``1.0.0-2``,  ``1.0.0-1``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0``
   :depends bioconductor-biostrings: ``>=2.70.1,<2.71.0a0``
   :depends bioconductor-msstats: ``>=4.10.0,<4.11.0``
   :depends bioconductor-msstats: ``>=4.10.0,<4.11.0a0``
   :depends bioconductor-msstatsconvert: ``>=1.12.0,<1.13.0``
   :depends bioconductor-msstatsconvert: ``>=1.12.0,<1.13.0a0``
   :depends bioconductor-msstatstmt: ``>=2.10.0,<2.11.0``
   :depends bioconductor-msstatstmt: ``>=2.10.0,<2.11.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends libstdcxx-ng: ``>=12``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-checkmate: 
   :depends r-data.table: 
   :depends r-dplyr: 
   :depends r-ggplot2: 
   :depends r-ggrepel: 
   :depends r-gridextra: 
   :depends r-rcpp: 
   :depends r-stringi: 
   :depends r-stringr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-msstatsptm

   and update with::

      mamba update bioconductor-msstatsptm

  To create a new environment, run::

      mamba create --name myenvname bioconductor-msstatsptm

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-msstatsptm:<tag>

   (see `bioconductor-msstatsptm/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-msstatsptm| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-msstatsptm.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-msstatsptm
   :alt:   (downloads)
.. |docker_bioconductor-msstatsptm| image:: https://quay.io/repository/biocontainers/bioconductor-msstatsptm/status
   :target: https://quay.io/repository/biocontainers/bioconductor-msstatsptm
.. _`bioconductor-msstatsptm/tags`: https://quay.io/repository/biocontainers/bioconductor-msstatsptm?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-msstatsptm";
        var versions = ["2.4.1","2.2.4","2.0.0","2.0.0","1.4.2"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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