:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-msstatssamplesize'
.. highlight: bash

bioconductor-msstatssamplesize
==============================

.. conda:recipe:: bioconductor-msstatssamplesize
   :replaces_section_title:
   :noindex:

   Simulation tool for optimal design of high\-dimensional MS\-based proteomics experiment

   :homepage: https://bioconductor.org/packages/3.17/bioc/html/MSstatsSampleSize.html
   :license: Artistic-2.0
   :recipe: /`bioconductor-msstatssamplesize <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msstatssamplesize>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-msstatssamplesize/meta.yaml>`_

   The packages estimates the variance in the input protein abundance data and simulates data with predefined number of biological replicates based on the variance estimation. It reports the mean predictive accuracy of the classifier and mean protein importance over multiple iterations of the simulation.


.. conda:package:: bioconductor-msstatssamplesize

   |downloads_bioconductor-msstatssamplesize| |docker_bioconductor-msstatssamplesize|

   :versions:
      
      

      ``1.13.0-0``,  ``1.12.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.34.0,<1.35.0``
   :depends bioconductor-msstats: ``>=4.8.0,<4.9.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-caret: 
   :depends r-ggplot2: 
   :depends r-gridextra: 
   :depends r-reshape2: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-msstatssamplesize

   and update with::

      mamba update bioconductor-msstatssamplesize

  To create a new environment, run::

      mamba create --name myenvname bioconductor-msstatssamplesize

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-msstatssamplesize:<tag>

   (see `bioconductor-msstatssamplesize/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-msstatssamplesize| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-msstatssamplesize.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-msstatssamplesize
   :alt:   (downloads)
.. |docker_bioconductor-msstatssamplesize| image:: https://quay.io/repository/biocontainers/bioconductor-msstatssamplesize/status
   :target: https://quay.io/repository/biocontainers/bioconductor-msstatssamplesize
.. _`bioconductor-msstatssamplesize/tags`: https://quay.io/repository/biocontainers/bioconductor-msstatssamplesize?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-msstatssamplesize";
        var versions = ["1.13.0","1.12.0","1.8.0","1.6.0","1.4.0"];
    </script>






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-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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