:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-nanotubes' .. highlight: bash bioconductor-nanotubes ====================== .. conda:recipe:: bioconductor-nanotubes :replaces_section_title: :noindex: Mouse nanotube CAGE data :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/nanotubes.html :license: GPL-3 :recipe: /`bioconductor-nanotubes `_/`meta.yaml `_ Cap Analysis of Gene Expression \(CAGE\) data from \"Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo\" by Bornholdt et al. supplied as CAGE Transcription Start Sites \(CTSSs\). .. conda:package:: bioconductor-nanotubes |downloads_bioconductor-nanotubes| |docker_bioconductor-nanotubes| :versions: .. raw:: html
1.18.0-01.16.0-01.14.0-01.10.0-11.10.0-01.8.0-01.6.0-11.6.0-01.5.0-0 ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.5.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-nanotubes and update with:: mamba update bioconductor-nanotubes To create a new environment, run:: mamba create --name myenvname bioconductor-nanotubes with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-nanotubes: (see `bioconductor-nanotubes/tags`_ for valid values for ````) .. |downloads_bioconductor-nanotubes| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-nanotubes.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-nanotubes :alt: (downloads) .. |docker_bioconductor-nanotubes| image:: https://quay.io/repository/biocontainers/bioconductor-nanotubes/status :target: https://quay.io/repository/biocontainers/bioconductor-nanotubes .. _`bioconductor-nanotubes/tags`: https://quay.io/repository/biocontainers/bioconductor-nanotubes?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanotubes/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-nanotubes/README.html