:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-nethet' .. highlight: bash bioconductor-nethet =================== .. conda:recipe:: bioconductor-nethet :replaces_section_title: :noindex: A bioconductor package for high\-dimensional exploration of biological network heterogeneity :homepage: https://bioconductor.org/packages/3.18/bioc/html/nethet.html :license: GPL-2 :recipe: /`bioconductor-nethet `_/`meta.yaml `_ Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high\-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous\, high\-dimensional setting. In particular\, we provide code for formal two\-sample testing in Gaussian graphical models \(differential network and GGM\-GSA\; Stadler and Mukherjee\, 2013\, 2014\) and make a novel network\-based clustering algorithm available \(mixed graphical lasso\, Stadler and Mukherjee\, 2013\). .. conda:package:: bioconductor-nethet |downloads_bioconductor-nethet| |docker_bioconductor-nethet| :versions: .. raw:: html
1.34.0-01.32.0-01.30.0-11.30.0-01.26.0-21.26.0-11.26.0-01.24.0-01.22.0-1 ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.26.0-2``,  ``1.26.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.1-0``,  ``1.14.0-0`` .. raw:: html
:depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-limma: ``>=3.58.1,<3.59.0a0`` :depends bioconductor-multtest: ``>=2.58.0,<2.59.0`` :depends bioconductor-multtest: ``>=2.58.0,<2.59.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-compquadform: :depends r-genenet: :depends r-ggm: :depends r-ggplot2: :depends r-glasso: :depends r-glmnet: :depends r-gsa: :depends r-huge: :depends r-icsnp: :depends r-mclust: :depends r-mvtnorm: :depends r-network: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-nethet and update with:: mamba update bioconductor-nethet To create a new environment, run:: mamba create --name myenvname bioconductor-nethet with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-nethet: (see `bioconductor-nethet/tags`_ for valid values for ````) .. |downloads_bioconductor-nethet| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-nethet.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-nethet :alt: (downloads) .. |docker_bioconductor-nethet| image:: https://quay.io/repository/biocontainers/bioconductor-nethet/status :target: https://quay.io/repository/biocontainers/bioconductor-nethet .. _`bioconductor-nethet/tags`: https://quay.io/repository/biocontainers/bioconductor-nethet?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nethet/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-nethet/README.html