:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-netresponse' .. highlight: bash bioconductor-netresponse ======================== .. conda:recipe:: bioconductor-netresponse :replaces_section_title: :noindex: Functional Network Analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/netresponse.html :license: GPL (>=2) :recipe: /`bioconductor-netresponse `_/`meta.yaml `_ Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling. .. conda:package:: bioconductor-netresponse |downloads_bioconductor-netresponse| |docker_bioconductor-netresponse| :versions: .. raw:: html
1.62.0-01.60.0-01.58.0-11.58.0-01.54.0-21.54.0-11.54.0-01.52.0-01.50.0-1 ``1.62.0-0``,  ``1.60.0-0``,  ``1.58.0-1``,  ``1.58.0-0``,  ``1.54.0-2``,  ``1.54.0-1``,  ``1.54.0-0``,  ``1.52.0-0``,  ``1.50.0-1``,  ``1.50.0-0``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-1``,  ``1.42.0-0`` .. raw:: html
:depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0`` :depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0a0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0a0`` :depends bioconductor-minet: ``>=3.60.0,<3.61.0`` :depends bioconductor-minet: ``>=3.60.0,<3.61.0a0`` :depends bioconductor-qvalue: ``>=2.34.0,<2.35.0`` :depends bioconductor-qvalue: ``>=2.34.0,<2.35.0a0`` :depends bioconductor-rgraphviz: ``>=2.46.0,<2.47.0`` :depends bioconductor-rgraphviz: ``>=2.46.0,<2.47.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-ggplot2: :depends r-igraph: :depends r-mclust: :depends r-plyr: :depends r-rcolorbrewer: :depends r-reshape2: :depends r-rmarkdown: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-netresponse and update with:: mamba update bioconductor-netresponse To create a new environment, run:: mamba create --name myenvname bioconductor-netresponse with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-netresponse: (see `bioconductor-netresponse/tags`_ for valid values for ````) .. |downloads_bioconductor-netresponse| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-netresponse.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-netresponse :alt: (downloads) .. |docker_bioconductor-netresponse| image:: https://quay.io/repository/biocontainers/bioconductor-netresponse/status :target: https://quay.io/repository/biocontainers/bioconductor-netresponse .. _`bioconductor-netresponse/tags`: https://quay.io/repository/biocontainers/bioconductor-netresponse?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-netresponse/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-netresponse/README.html