:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-neuca' .. highlight: bash bioconductor-neuca ================== .. conda:recipe:: bioconductor-neuca :replaces_section_title: :noindex: NEUral network\-based single\-Cell Annotation tool :homepage: https://bioconductor.org/packages/3.17/bioc/html/NeuCA.html :license: GPL-2 :recipe: /`bioconductor-neuca `_/`meta.yaml `_ NeuCA is is a neural\-network based method for scRNA\-seq data annotation. It can automatically adjust its classification strategy depending on cell type correlations\, to accurately annotate cell. NeuCA can automatically utilize the structure information of the cell types through a hierarchical tree to improve the annotation accuracy. It is especially helpful when the data contain closely correlated cell types. .. conda:package:: bioconductor-neuca |downloads_bioconductor-neuca| |docker_bioconductor-neuca| :versions: ``1.6.0-0``,  ``1.4.0-0``,  ``1.0.0-0`` :depends bioconductor-limma: ``>=3.56.0,<3.57.0`` :depends bioconductor-singlecellexperiment: ``>=1.22.0,<1.23.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-e1071: :depends r-keras: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-neuca and update with:: mamba update bioconductor-neuca To create a new environment, run:: mamba create --name myenvname bioconductor-neuca with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-neuca: (see `bioconductor-neuca/tags`_ for valid values for ````) .. |downloads_bioconductor-neuca| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-neuca.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-neuca :alt: (downloads) .. |docker_bioconductor-neuca| image:: https://quay.io/repository/biocontainers/bioconductor-neuca/status :target: https://quay.io/repository/biocontainers/bioconductor-neuca .. _`bioconductor-neuca/tags`: https://quay.io/repository/biocontainers/bioconductor-neuca?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-neuca/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-neuca/README.html