:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-nullranges' .. highlight: bash bioconductor-nullranges ======================= .. conda:recipe:: bioconductor-nullranges :replaces_section_title: :noindex: Generation of null ranges via bootstrapping or covariate matching :homepage: https://bioconductor.org/packages/3.18/bioc/html/nullranges.html :license: GPL-3 :recipe: /`bioconductor-nullranges `_/`meta.yaml `_ Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges \(using the block bootstrap framework of Bickel et al 2010\)\, or sets of control ranges that are matched across one or more covariates. nullranges is designed to be inter\-operable with other packages for analysis of genomic overlap enrichment\, including the plyranges Bioconductor package. .. conda:package:: bioconductor-nullranges |downloads_bioconductor-nullranges| |docker_bioconductor-nullranges| :versions: ``1.8.0-0``,  ``1.6.2-0``,  ``1.4.0-0``,  ``1.0.0-0`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-interactionset: ``>=1.30.0,<1.31.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-plyranges: ``>=1.22.0,<1.23.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-data.table: :depends r-ggplot2: :depends r-ggridges: :depends r-progress: :depends r-rlang: :depends r-scales: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-nullranges and update with:: mamba update bioconductor-nullranges To create a new environment, run:: mamba create --name myenvname bioconductor-nullranges with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-nullranges: (see `bioconductor-nullranges/tags`_ for valid values for ````) .. |downloads_bioconductor-nullranges| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-nullranges.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-nullranges :alt: (downloads) .. |docker_bioconductor-nullranges| image:: https://quay.io/repository/biocontainers/bioconductor-nullranges/status :target: https://quay.io/repository/biocontainers/bioconductor-nullranges .. _`bioconductor-nullranges/tags`: https://quay.io/repository/biocontainers/bioconductor-nullranges?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nullranges/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-nullranges/README.html