:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-oligo' .. highlight: bash bioconductor-oligo ================== .. conda:recipe:: bioconductor-oligo :replaces_section_title: :noindex: Preprocessing tools for oligonucleotide arrays :homepage: https://bioconductor.org/packages/3.18/bioc/html/oligo.html :license: LGPL (>= 2) :recipe: /`bioconductor-oligo `_/`meta.yaml `_ :links: biotools: :biotools:`oligo` A package to analyze oligonucleotide arrays \(expression\/SNP\/tiling\/exon\) at probe\-level. It currently supports Affymetrix \(CEL files\) and NimbleGen arrays \(XYS files\). .. conda:package:: bioconductor-oligo |downloads_bioconductor-oligo| |docker_bioconductor-oligo| :versions: .. raw:: html
1.66.0-01.64.1-01.62.0-11.62.0-01.58.0-21.58.0-11.58.0-01.56.0-01.54.1-0 ``1.66.0-0``,  ``1.64.1-0``,  ``1.62.0-1``,  ``1.62.0-0``,  ``1.58.0-2``,  ``1.58.0-1``,  ``1.58.0-0``,  ``1.56.0-0``,  ``1.54.1-0``,  ``1.54.0-0``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-1``,  ``1.46.0-0``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.2-0``,  ``1.40.1-0`` .. raw:: html
:depends bioconductor-affxparser: ``>=1.74.0,<1.75.0`` :depends bioconductor-affxparser: ``>=1.74.0,<1.75.0a0`` :depends bioconductor-affyio: ``>=1.72.0,<1.73.0`` :depends bioconductor-affyio: ``>=1.72.0,<1.73.0a0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-biocgenerics: ``>=0.48.1,<0.49.0a0`` :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0`` :depends bioconductor-biostrings: ``>=2.70.1,<2.71.0a0`` :depends bioconductor-oligoclasses: ``>=1.64.0,<1.65.0`` :depends bioconductor-oligoclasses: ``>=1.64.0,<1.65.0a0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0`` :depends bioconductor-preprocesscore: ``>=1.64.0,<1.65.0a0`` :depends bioconductor-zlibbioc: ``>=1.48.0,<1.49.0`` :depends bioconductor-zlibbioc: ``>=1.48.0,<1.49.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dbi: ``>=0.3.1`` :depends r-ff: :depends r-rsqlite: ``>=1.0.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-oligo and update with:: mamba update bioconductor-oligo To create a new environment, run:: mamba create --name myenvname bioconductor-oligo with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-oligo: (see `bioconductor-oligo/tags`_ for valid values for ````) .. |downloads_bioconductor-oligo| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-oligo.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-oligo :alt: (downloads) .. |docker_bioconductor-oligo| image:: https://quay.io/repository/biocontainers/bioconductor-oligo/status :target: https://quay.io/repository/biocontainers/bioconductor-oligo .. _`bioconductor-oligo/tags`: https://quay.io/repository/biocontainers/bioconductor-oligo?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-oligo/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-oligo/README.html