:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-paircompviz' .. highlight: bash bioconductor-paircompviz ======================== .. conda:recipe:: bioconductor-paircompviz :replaces_section_title: :noindex: Multiple comparison test visualization :homepage: https://bioconductor.org/packages/3.18/bioc/html/paircompviz.html :license: GPL (>=3.0) :recipe: /`bioconductor-paircompviz `_/`meta.yaml `_ :links: biotools: :biotools:`paircompviz`, doi: :doi:`10.1038/nmeth.3252` This package provides visualization of the results from the multiple \(i.e. pairwise\) comparison tests such as pairwise.t.test\, pairwise.prop.test or pairwise.wilcox.test. The groups being compared are visualized as nodes in Hasse diagram. Such approach enables very clear and vivid depiction of which group is significantly greater than which others\, especially if comparing a large number of groups. .. conda:package:: bioconductor-paircompviz |downloads_bioconductor-paircompviz| |docker_bioconductor-paircompviz| :versions: .. raw:: html
1.40.0-01.38.0-01.36.0-01.32.0-01.30.0-01.28.0-11.28.0-01.26.0-01.24.0-0 ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0`` .. raw:: html
:depends bioconductor-rgraphviz: ``>=2.46.0,<2.47.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-paircompviz and update with:: mamba update bioconductor-paircompviz To create a new environment, run:: mamba create --name myenvname bioconductor-paircompviz with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-paircompviz: (see `bioconductor-paircompviz/tags`_ for valid values for ````) .. |downloads_bioconductor-paircompviz| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-paircompviz.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-paircompviz :alt: (downloads) .. |docker_bioconductor-paircompviz| image:: https://quay.io/repository/biocontainers/bioconductor-paircompviz/status :target: https://quay.io/repository/biocontainers/bioconductor-paircompviz .. _`bioconductor-paircompviz/tags`: https://quay.io/repository/biocontainers/bioconductor-paircompviz?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-paircompviz/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-paircompviz/README.html