:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-pics' .. highlight: bash bioconductor-pics ================= .. conda:recipe:: bioconductor-pics :replaces_section_title: :noindex: Probabilistic inference of ChIP\-seq :homepage: https://bioconductor.org/packages/3.18/bioc/html/PICS.html :license: Artistic-2.0 :recipe: /`bioconductor-pics `_/`meta.yaml `_ :links: biotools: :biotools:`pics` Probabilistic inference of ChIP\-Seq using an empirical Bayes mixture model approach. .. conda:package:: bioconductor-pics |downloads_bioconductor-pics| |docker_bioconductor-pics| :versions: .. raw:: html
2.46.0-02.44.0-02.42.0-12.42.0-02.38.0-22.38.0-12.38.0-02.36.0-02.34.0-1 ``2.46.0-0``,  ``2.44.0-0``,  ``2.42.0-1``,  ``2.42.0-0``,  ``2.38.0-2``,  ``2.38.0-1``,  ``2.38.0-0``,  ``2.36.0-0``,  ``2.34.0-1``,  ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-0``,  ``2.28.0-1``,  ``2.26.0-0``,  ``2.24.0-0``,  ``2.22.0-0``,  ``2.20.0-0`` .. raw:: html
:depends bioconductor-genomicalignments: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicalignments: ``>=1.38.0,<1.39.0a0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-genomicranges: ``>=1.54.1,<1.55.0a0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0a0`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0`` :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0a0`` :depends gsl: ``>=2.7,<2.8.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-pics and update with:: mamba update bioconductor-pics To create a new environment, run:: mamba create --name myenvname bioconductor-pics with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-pics: (see `bioconductor-pics/tags`_ for valid values for ````) .. |downloads_bioconductor-pics| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-pics.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-pics :alt: (downloads) .. |docker_bioconductor-pics| image:: https://quay.io/repository/biocontainers/bioconductor-pics/status :target: https://quay.io/repository/biocontainers/bioconductor-pics .. _`bioconductor-pics/tags`: https://quay.io/repository/biocontainers/bioconductor-pics?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pics/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-pics/README.html