:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-progeny' .. highlight: bash bioconductor-progeny ==================== .. conda:recipe:: bioconductor-progeny :replaces_section_title: :noindex: Pathway RespOnsive GENes for activity inference from gene expression :homepage: https://bioconductor.org/packages/3.14/bioc/html/progeny.html :license: Apache License (== 2.0) | file LICENSE :recipe: /`bioconductor-progeny `_/`meta.yaml `_ This package provides a function to infer pathway activity from gene expression using PROGENy. It contains the linear model we inferred in the publication \"Perturbation\-response genes reveal signaling footprints in cancer gene expression\". .. conda:package:: bioconductor-progeny |downloads_bioconductor-progeny| |docker_bioconductor-progeny| :versions: ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.4.1-0``,  ``1.4.0-0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dplyr: :depends r-ggplot2: :depends r-ggrepel: :depends r-gridextra: :depends r-tidyr: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-progeny and update with:: conda update bioconductor-progeny or use the docker container:: docker pull quay.io/biocontainers/bioconductor-progeny: (see `bioconductor-progeny/tags`_ for valid values for ````) .. |downloads_bioconductor-progeny| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-progeny.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-progeny :alt: (downloads) .. |docker_bioconductor-progeny| image:: https://quay.io/repository/biocontainers/bioconductor-progeny/status :target: https://quay.io/repository/biocontainers/bioconductor-progeny .. _`bioconductor-progeny/tags`: https://quay.io/repository/biocontainers/bioconductor-progeny?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-progeny/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-progeny/README.html