:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-qcmetrics'
.. highlight: bash

bioconductor-qcmetrics
======================

.. conda:recipe:: bioconductor-qcmetrics
   :replaces_section_title:
   :noindex:

   A Framework for Quality Control

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/qcmetrics.html
   :license: GPL-2
   :recipe: /`bioconductor-qcmetrics <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-qcmetrics>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-qcmetrics/meta.yaml>`_
   :links: biotools: :biotools:`qcmetrics`, doi: :doi:`10.1038/nmeth.3252`

   The package provides a framework for generic quality control of data. It permits to create\, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.


.. conda:package:: bioconductor-qcmetrics

   |downloads_bioconductor-qcmetrics| |docker_bioconductor-qcmetrics|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.40.0-0</code>,  <code>1.38.0-0</code>,  <code>1.36.0-0</code>,  <code>1.32.0-0</code>,  <code>1.30.0-0</code>,  <code>1.28.0-1</code>,  <code>1.28.0-0</code>,  <code>1.26.0-0</code>,  <code>1.24.0-0</code>,  </span></summary>
      

      ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.1-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-knitr: 
   :depends r-pander: 
   :depends r-xtable: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-qcmetrics

   and update with::

      mamba update bioconductor-qcmetrics

  To create a new environment, run::

      mamba create --name myenvname bioconductor-qcmetrics

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-qcmetrics:<tag>

   (see `bioconductor-qcmetrics/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-qcmetrics| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-qcmetrics.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-qcmetrics
   :alt:   (downloads)
.. |docker_bioconductor-qcmetrics| image:: https://quay.io/repository/biocontainers/bioconductor-qcmetrics/status
   :target: https://quay.io/repository/biocontainers/bioconductor-qcmetrics
.. _`bioconductor-qcmetrics/tags`: https://quay.io/repository/biocontainers/bioconductor-qcmetrics?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-qcmetrics";
        var versions = ["1.40.0","1.38.0","1.36.0","1.32.0","1.30.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-qcmetrics/README.html