:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-qvalue'
.. highlight: bash

bioconductor-qvalue
===================

.. conda:recipe:: bioconductor-qvalue
   :replaces_section_title:
   :noindex:

   Q\-value estimation for false discovery rate control

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/qvalue.html
   :license: LGPL
   :recipe: /`bioconductor-qvalue <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-qvalue>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-qvalue/meta.yaml>`_

   This package takes a list of p\-values resulting from the simultaneous testing of many hypotheses and estimates their q\-values and local FDR values. The q\-value of a test measures the proportion of false positives incurred \(called the false discovery rate\) when that particular test is called significant. The local FDR measures the posterior probability the null hypothesis is true given the test\'s p\-value. Various plots are automatically generated\, allowing one to make sensible significance cut\-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q\-values from this software. The software can be applied to problems in genomics\, brain imaging\, astrophysics\, and data mining.


.. conda:package:: bioconductor-qvalue

   |downloads_bioconductor-qvalue| |docker_bioconductor-qvalue|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>2.34.0-0</code>,  <code>2.32.0-0</code>,  <code>2.30.0-0</code>,  <code>2.26.0-0</code>,  <code>2.24.0-0</code>,  <code>2.22.0-1</code>,  <code>2.22.0-0</code>,  <code>2.20.0-0</code>,  <code>2.18.0-1</code>,  </span></summary>
      

      ``2.34.0-0``,  ``2.32.0-0``,  ``2.30.0-0``,  ``2.26.0-0``,  ``2.24.0-0``,  ``2.22.0-1``,  ``2.22.0-0``,  ``2.20.0-0``,  ``2.18.0-1``,  ``2.18.0-0``,  ``2.16.0-1``,  ``2.16.0-0``,  ``2.14.1-0``,  ``2.14.0-0``,  ``2.12.0-0``,  ``2.10.0-0``,  ``2.8.0-0``,  ``2.6.0-0``,  ``2.4.2-0``,  ``2.2.2-0``

      
      .. raw:: html

         </details>
      

   
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ggplot2: 
   :depends r-reshape2: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-qvalue

   and update with::

      mamba update bioconductor-qvalue

  To create a new environment, run::

      mamba create --name myenvname bioconductor-qvalue

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-qvalue:<tag>

   (see `bioconductor-qvalue/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-qvalue| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-qvalue.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-qvalue
   :alt:   (downloads)
.. |docker_bioconductor-qvalue| image:: https://quay.io/repository/biocontainers/bioconductor-qvalue/status
   :target: https://quay.io/repository/biocontainers/bioconductor-qvalue
.. _`bioconductor-qvalue/tags`: https://quay.io/repository/biocontainers/bioconductor-qvalue?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-qvalue";
        var versions = ["2.34.0","2.32.0","2.30.0","2.26.0","2.24.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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