:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-r453plus1toolbox'
.. highlight: bash

bioconductor-r453plus1toolbox
=============================

.. conda:recipe:: bioconductor-r453plus1toolbox
   :replaces_section_title:
   :noindex:

   A package for importing and analyzing data from Roche\'s Genome Sequencer System

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/R453Plus1Toolbox.html
   :license: LGPL-3
   :recipe: /`bioconductor-r453plus1toolbox <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-r453plus1toolbox>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-r453plus1toolbox/meta.yaml>`_

   The R453Plus1 Toolbox comprises useful functions for the analysis of data generated by Roche\'s 454 sequencing platform. It adds functions for quality assurance as well as for annotation and visualization of detected variants\, complementing the software tools shipped by Roche with their product. Further\, a pipeline for the detection of structural variants is provided.


.. conda:package:: bioconductor-r453plus1toolbox

   |downloads_bioconductor-r453plus1toolbox| |docker_bioconductor-r453plus1toolbox|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.52.0-0</code>,  <code>1.50.0-0</code>,  <code>1.48.0-1</code>,  <code>1.48.0-0</code>,  <code>1.44.0-2</code>,  <code>1.44.0-1</code>,  <code>1.44.0-0</code>,  <code>1.42.0-0</code>,  <code>1.40.0-1</code>,  </span></summary>
      

      ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-1``,  ``1.48.0-0``,  ``1.44.0-2``,  ``1.44.0-1``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-1``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.34.0-1``,  ``1.32.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0``
   :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0``
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biocgenerics: ``>=0.48.1,<0.49.0a0``
   :depends bioconductor-biomart: ``>=2.58.0,<2.59.0``
   :depends bioconductor-biomart: ``>=2.58.0,<2.59.0a0``
   :depends bioconductor-biostrings: ``>=2.70.0,<2.71.0``
   :depends bioconductor-biostrings: ``>=2.70.1,<2.71.0a0``
   :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0``
   :depends bioconductor-bsgenome: ``>=1.70.1,<1.71.0a0``
   :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0``
   :depends bioconductor-genomicranges: ``>=1.54.1,<1.55.0a0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0``
   :depends bioconductor-iranges: ``>=2.36.0,<2.37.0a0``
   :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0``
   :depends bioconductor-rsamtools: ``>=2.18.0,<2.19.0a0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-s4vectors: ``>=0.40.2,<0.41.0a0``
   :depends bioconductor-shortread: ``>=1.60.0,<1.61.0``
   :depends bioconductor-shortread: ``>=1.60.0,<1.61.0a0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0a0``
   :depends bioconductor-variantannotation: ``>=1.48.0,<1.49.0``
   :depends bioconductor-variantannotation: ``>=1.48.1,<1.49.0a0``
   :depends bioconductor-xvector: ``>=0.42.0,<0.43.0``
   :depends bioconductor-xvector: ``>=0.42.0,<0.43.0a0``
   :depends libblas: ``>=3.9.0,<4.0a0``
   :depends libgcc-ng: ``>=12``
   :depends liblapack: ``>=3.9.0,<4.0a0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-r2html: 
   :depends r-teachingdemos: 
   :depends r-xtable: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-r453plus1toolbox

   and update with::

      mamba update bioconductor-r453plus1toolbox

  To create a new environment, run::

      mamba create --name myenvname bioconductor-r453plus1toolbox

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-r453plus1toolbox:<tag>

   (see `bioconductor-r453plus1toolbox/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-r453plus1toolbox| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-r453plus1toolbox.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-r453plus1toolbox
   :alt:   (downloads)
.. |docker_bioconductor-r453plus1toolbox| image:: https://quay.io/repository/biocontainers/bioconductor-r453plus1toolbox/status
   :target: https://quay.io/repository/biocontainers/bioconductor-r453plus1toolbox
.. _`bioconductor-r453plus1toolbox/tags`: https://quay.io/repository/biocontainers/bioconductor-r453plus1toolbox?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-r453plus1toolbox";
        var versions = ["1.52.0","1.50.0","1.48.0","1.48.0","1.44.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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