:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-rcx'
.. highlight: bash

bioconductor-rcx
================

.. conda:recipe:: bioconductor-rcx
   :replaces_section_title:
   :noindex:

   R package implementing the Cytoscape Exchange \(CX\) format

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/RCX.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-rcx <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rcx>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rcx/meta.yaml>`_

   Create\, handle\, validate\, visualize and convert networks in the Cytoscape exchange \(CX\) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform\, a online commons for biological networks\, and the network visualization software Cytocape.


.. conda:package:: bioconductor-rcx

   |downloads_bioconductor-rcx| |docker_bioconductor-rcx|

   :versions:
      
      

      ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``

      

   
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-igraph: 
   :depends r-jsonlite: 
   :depends r-plyr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-rcx

   and update with::

      mamba update bioconductor-rcx

  To create a new environment, run::

      mamba create --name myenvname bioconductor-rcx

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-rcx:<tag>

   (see `bioconductor-rcx/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-rcx| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rcx.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-rcx
   :alt:   (downloads)
.. |docker_bioconductor-rcx| image:: https://quay.io/repository/biocontainers/bioconductor-rcx/status
   :target: https://quay.io/repository/biocontainers/bioconductor-rcx
.. _`bioconductor-rcx/tags`: https://quay.io/repository/biocontainers/bioconductor-rcx?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-rcx";
        var versions = ["1.6.0","1.4.0","1.2.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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