:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rcy3' .. highlight: bash bioconductor-rcy3 ================= .. conda:recipe:: bioconductor-rcy3 :replaces_section_title: :noindex: Functions to Access and Control Cytoscape :homepage: https://bioconductor.org/packages/3.18/bioc/html/RCy3.html :license: MIT + file LICENSE :recipe: /`bioconductor-rcy3 `_/`meta.yaml `_ Vizualize\, analyze and explore networks using Cytoscape via R. Anything you can do using the graphical user interface of Cytoscape\, you can now do with a single RCy3 function. .. conda:package:: bioconductor-rcy3 |downloads_bioconductor-rcy3| |docker_bioconductor-rcy3| :versions: .. raw:: html
2.22.1-02.20.0-02.18.0-02.14.0-02.12.0-02.10.2-02.10.0-02.8.0-02.6.0-0 ``2.22.1-0``,  ``2.20.0-0``,  ``2.18.0-0``,  ``2.14.0-0``,  ``2.12.0-0``,  ``2.10.2-0``,  ``2.10.0-0``,  ``2.8.0-0``,  ``2.6.0-0``,  ``2.4.3-0``,  ``2.2.9-0``,  ``2.2.6-0``,  ``2.0.88-0``,  ``1.8.0-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends cytoscape: ``>=3.7.1`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-base64enc: :depends r-base64url: :depends r-fs: :depends r-glue: :depends r-gplots: :depends r-httr: :depends r-irdisplay: :depends r-irkernel: :depends r-rcolorbrewer: :depends r-rcurl: :depends r-rjsonio: :depends r-stringi: :depends r-uuid: :depends r-xml: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rcy3 and update with:: mamba update bioconductor-rcy3 To create a new environment, run:: mamba create --name myenvname bioconductor-rcy3 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rcy3: (see `bioconductor-rcy3/tags`_ for valid values for ````) .. |downloads_bioconductor-rcy3| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rcy3.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rcy3 :alt: (downloads) .. |docker_bioconductor-rcy3| image:: https://quay.io/repository/biocontainers/bioconductor-rcy3/status :target: https://quay.io/repository/biocontainers/bioconductor-rcy3 .. _`bioconductor-rcy3/tags`: https://quay.io/repository/biocontainers/bioconductor-rcy3?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rcy3/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rcy3/README.html