:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rebook' .. highlight: bash bioconductor-rebook =================== .. conda:recipe:: bioconductor-rebook :replaces_section_title: :noindex: Re\-using Content in Bioconductor Books :homepage: https://bioconductor.org/packages/3.18/bioc/html/rebook.html :license: GPL-3 :recipe: /`bioconductor-rebook `_/`meta.yaml `_ Provides utilities to re\-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book\, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment. .. conda:package:: bioconductor-rebook |downloads_bioconductor-rebook| |docker_bioconductor-rebook| :versions: ``1.12.0-0``,  ``1.10.1-0``,  ``1.8.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-2``,  ``1.0.0-1`` :depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0`` :depends bioconductor-dir.expiry: ``>=1.10.0,<1.11.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-codedepends: :depends r-filelock: :depends r-knitr: ``>=1.32`` :depends r-rmarkdown: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rebook and update with:: mamba update bioconductor-rebook To create a new environment, run:: mamba create --name myenvname bioconductor-rebook with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rebook: (see `bioconductor-rebook/tags`_ for valid values for ````) .. |downloads_bioconductor-rebook| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rebook.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rebook :alt: (downloads) .. |docker_bioconductor-rebook| image:: https://quay.io/repository/biocontainers/bioconductor-rebook/status :target: https://quay.io/repository/biocontainers/bioconductor-rebook .. _`bioconductor-rebook/tags`: https://quay.io/repository/biocontainers/bioconductor-rebook?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rebook/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rebook/README.html