:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-redseq' .. highlight: bash bioconductor-redseq =================== .. conda:recipe:: bioconductor-redseq :replaces_section_title: :noindex: Analysis of high\-throughput sequencing data processed by restriction enzyme digestion :homepage: https://bioconductor.org/packages/3.14/bioc/html/REDseq.html :license: GPL (>=2) :recipe: /`bioconductor-redseq `_/`meta.yaml `_ The package includes functions to build restriction enzyme cut site \(RECS\) map\, distribute mapped sequences on the map with five different approaches\, find enriched\/depleted RECSs for a sample\, and identify differentially enriched\/depleted RECSs between samples. .. conda:package:: bioconductor-redseq |downloads_bioconductor-redseq| |docker_bioconductor-redseq| :versions: ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.28.0-0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0`` :depends bioconductor-bsgenome: ``>=1.62.0,<1.63.0`` :depends bioconductor-bsgenome.celegans.ucsc.ce2: ``>=1.4.0,<1.5.0`` :depends bioconductor-chippeakanno: ``>=3.28.0,<3.29.0`` :depends bioconductor-iranges: ``>=2.28.0,<2.29.0`` :depends bioconductor-multtest: ``>=2.50.0,<2.51.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-redseq and update with:: conda update bioconductor-redseq or use the docker container:: docker pull quay.io/biocontainers/bioconductor-redseq: (see `bioconductor-redseq/tags`_ for valid values for ````) .. |downloads_bioconductor-redseq| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-redseq.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-redseq :alt: (downloads) .. |docker_bioconductor-redseq| image:: https://quay.io/repository/biocontainers/bioconductor-redseq/status :target: https://quay.io/repository/biocontainers/bioconductor-redseq .. _`bioconductor-redseq/tags`: https://quay.io/repository/biocontainers/bioconductor-redseq?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-redseq/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-redseq/README.html