:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-risa' .. highlight: bash bioconductor-risa ================= .. conda:recipe:: bioconductor-risa :replaces_section_title: :noindex: Converting experimental metadata from ISA\-tab into Bioconductor data structures :homepage: https://bioconductor.org/packages/3.14/bioc/html/Risa.html :license: LGPL :recipe: /`bioconductor-risa `_/`meta.yaml `_ :links: biotools: :biotools:`risa` The Investigation \/ Study \/ Assay \(ISA\) tab\-delimited format is a general purpose framework with which to collect and communicate complex metadata \(i.e. sample characteristics\, technologies used\, type of measurements made\) from experiments employing a combination of technologies\, spanning from traditional approaches to high\-throughput techniques. Risa allows to access metadata\/data in ISA\-Tab format and build Bioconductor data structures. Currently\, data generated from microarray\, flow cytometry and metabolomics\-based \(i.e. mass spectrometry\) assays are supported. The package is extendable and efforts are undergoing to support metadata associated to proteomics assays. .. conda:package:: bioconductor-risa |downloads_bioconductor-risa| |docker_bioconductor-risa| :versions: .. raw:: html
1.36.0-11.36.0-01.34.0-01.32.0-11.32.0-01.30.0-01.28.0-01.26.0-11.24.0-0 ``1.36.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-1``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0`` .. raw:: html
:depends bioconductor-affy: ``>=1.72.0,<1.73.0`` :depends bioconductor-biobase: ``>=2.54.0,<2.55.0`` :depends bioconductor-biocviews: ``>=1.62.0,<1.63.0`` :depends bioconductor-xcms: ``>=3.16.0,<3.17.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-rcpp: ``>=0.9.13`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-risa and update with:: conda update bioconductor-risa or use the docker container:: docker pull quay.io/biocontainers/bioconductor-risa: (see `bioconductor-risa/tags`_ for valid values for ````) .. |downloads_bioconductor-risa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-risa.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-risa :alt: (downloads) .. |docker_bioconductor-risa| image:: https://quay.io/repository/biocontainers/bioconductor-risa/status :target: https://quay.io/repository/biocontainers/bioconductor-risa .. _`bioconductor-risa/tags`: https://quay.io/repository/biocontainers/bioconductor-risa?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-risa/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-risa/README.html