:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-risa'
.. highlight: bash

bioconductor-risa
=================

.. conda:recipe:: bioconductor-risa
   :replaces_section_title:
   :noindex:

   Converting experimental metadata from ISA\-tab into Bioconductor data structures

   :homepage: https://bioconductor.org/packages/3.11/bioc/html/Risa.html
   :license: LGPL
   :recipe: /`bioconductor-risa <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-risa>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-risa/meta.yaml>`_
   :links: biotools: :biotools:`risa`

   The Investigation \/ Study \/ Assay \(ISA\) tab\-delimited format is a general purpose framework with which to collect and communicate complex metadata \(i.e. sample characteristics\, technologies used\, type of measurements made\) from experiments employing a combination of technologies\, spanning from traditional approaches to high\-throughput techniques. Risa allows to access metadata\/data in ISA\-Tab format and build Bioconductor data structures. Currently\, data generated from microarray\, flow cytometry and metabolomics\-based \(i.e. mass spectrometry\) assays are supported. The package is extendable and efforts are undergoing to support metadata associated to proteomics assays.


.. conda:package:: bioconductor-risa

   |downloads_bioconductor-risa| |docker_bioconductor-risa|

   :versions:
      
      

      ``1.30.0-0``,  ``1.28.0-0``,  ``1.26.0-1``,  ``1.24.0-0``,  ``1.20.0-0``,  ``1.18.0-0``

      

   
   :depends bioconductor-affy: ``>=1.66.0,<1.67.0``
   :depends bioconductor-biobase: ``>=2.48.0,<2.49.0``
   :depends bioconductor-biocviews: ``>=1.56.0,<1.57.0``
   :depends bioconductor-xcms: ``>=3.10.0,<3.11.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=7.3.0``
   :depends liblapack: ``>=3.8.0,<3.9.0a0``
   :depends libstdcxx-ng: ``>=7.3.0``
   :depends r-base: ``>=4.0,<4.1.0a0``
   :depends r-rcpp: ``>=0.9.13``
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-risa

   and update with::

      conda update bioconductor-risa

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-risa:<tag>

   (see `bioconductor-risa/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-risa| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-risa.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-risa
   :alt:   (downloads)
.. |docker_bioconductor-risa| image:: https://quay.io/repository/biocontainers/bioconductor-risa/status
   :target: https://quay.io/repository/biocontainers/bioconductor-risa
.. _`bioconductor-risa/tags`: https://quay.io/repository/biocontainers/bioconductor-risa?tab=tags







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