:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rnaseqsamplesize' .. highlight: bash bioconductor-rnaseqsamplesize ============================= .. conda:recipe:: bioconductor-rnaseqsamplesize :replaces_section_title: :noindex: RnaSeqSampleSize :homepage: https://bioconductor.org/packages/3.14/bioc/html/RnaSeqSampleSize.html :license: GPL (>= 2) :recipe: /`bioconductor-rnaseqsamplesize `_/`meta.yaml `_ RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA\-seq data. It controls FDR for multiple testing and utilizes the average read count and dispersion distributions from real data to estimate a more reliable sample size. It is also equipped with several unique features\, including estimation for interested genes or pathway\, power curve visualization\, and parameter optimization. .. conda:package:: bioconductor-rnaseqsamplesize |downloads_bioconductor-rnaseqsamplesize| |docker_bioconductor-rnaseqsamplesize| :versions: ``2.4.1-0``,  ``2.4.0-0``,  ``2.2.0-0``,  ``2.0.0-2``,  ``2.0.0-1``,  ``1.17.0-1``,  ``1.16.0-1``,  ``1.14.0-0``,  ``1.12.0-2`` :depends bioconductor-biomart: ``>=2.50.0,<2.51.0`` :depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-keggrest: ``>=1.34.0,<1.35.0`` :depends bioconductor-rnaseqsamplesizedata: ``>=1.26.0,<1.27.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-heatmap3: :depends r-matlab: :depends r-rcpp: ``>=0.11.2`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-rnaseqsamplesize and update with:: conda update bioconductor-rnaseqsamplesize or use the docker container:: docker pull quay.io/biocontainers/bioconductor-rnaseqsamplesize: (see `bioconductor-rnaseqsamplesize/tags`_ for valid values for ````) .. |downloads_bioconductor-rnaseqsamplesize| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rnaseqsamplesize.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rnaseqsamplesize :alt: (downloads) .. |docker_bioconductor-rnaseqsamplesize| image:: https://quay.io/repository/biocontainers/bioconductor-rnaseqsamplesize/status :target: https://quay.io/repository/biocontainers/bioconductor-rnaseqsamplesize .. _`bioconductor-rnaseqsamplesize/tags`: https://quay.io/repository/biocontainers/bioconductor-rnaseqsamplesize?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rnaseqsamplesize/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rnaseqsamplesize/README.html