:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-rsweep'
.. highlight: bash

bioconductor-rsweep
===================

.. conda:recipe:: bioconductor-rsweep
   :replaces_section_title:
   :noindex:

   Functions to creation of low dimensional comparative matrices of Amino Acid Sequence occurrences

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/rSWeeP.html
   :license: GPL-3
   :recipe: /`bioconductor-rsweep <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rsweep>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rsweep/meta.yaml>`_

   The SWeeP method was developed to favor the analizes between amino acids sequences and to assist alignment free phylogenetic studies. This method is based on the concept of sparse words\, which is applied in the scan of biological sequences and its the conversion in a matrix of ocurrences. Aiming the generation of low dimensional matrices of Amino Acid Sequence occurrences.


.. conda:package:: bioconductor-rsweep

   |downloads_bioconductor-rsweep| |docker_bioconductor-rsweep|

   :versions:
      
      

      ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-pracma: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-rsweep

   and update with::

      mamba update bioconductor-rsweep

  To create a new environment, run::

      mamba create --name myenvname bioconductor-rsweep

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-rsweep:<tag>

   (see `bioconductor-rsweep/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-rsweep| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rsweep.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-rsweep
   :alt:   (downloads)
.. |docker_bioconductor-rsweep| image:: https://quay.io/repository/biocontainers/bioconductor-rsweep/status
   :target: https://quay.io/repository/biocontainers/bioconductor-rsweep
.. _`bioconductor-rsweep/tags`: https://quay.io/repository/biocontainers/bioconductor-rsweep?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-rsweep";
        var versions = ["1.14.0","1.12.0","1.10.0","1.6.0","1.4.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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