:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rtcga.methylation' .. highlight: bash bioconductor-rtcga.methylation ============================== .. conda:recipe:: bioconductor-rtcga.methylation :replaces_section_title: :noindex: Methylation datasets from The Cancer Genome Atlas Project :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/RTCGA.methylation.html :license: GPL-2 :recipe: /`bioconductor-rtcga.methylation `_/`meta.yaml `_ Package provides methylation \(humanmethylation27\) datasets from The Cancer Genome Atlas Project for all available cohorts types from http\:\/\/gdac.broadinstitute.org\/. Data format is explained here https\:\/\/wiki.nci.nih.gov\/display\/TCGA\/DNA\+methylation Data from 2015\-11\-01 snapshot. .. conda:package:: bioconductor-rtcga.methylation |downloads_bioconductor-rtcga.methylation| |docker_bioconductor-rtcga.methylation| :versions: .. raw:: html
1.30.0-01.28.0-01.25.0-01.22.0-11.22.0-01.20.0-01.18.0-11.18.0-01.17.0-0 ``1.30.0-0``,  ``1.28.0-0``,  ``1.25.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.17.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0`` .. raw:: html
:depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-rtcga: ``>=1.32.0,<1.33.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rtcga.methylation and update with:: mamba update bioconductor-rtcga.methylation To create a new environment, run:: mamba create --name myenvname bioconductor-rtcga.methylation with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rtcga.methylation: (see `bioconductor-rtcga.methylation/tags`_ for valid values for ````) .. |downloads_bioconductor-rtcga.methylation| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rtcga.methylation.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rtcga.methylation :alt: (downloads) .. |docker_bioconductor-rtcga.methylation| image:: https://quay.io/repository/biocontainers/bioconductor-rtcga.methylation/status :target: https://quay.io/repository/biocontainers/bioconductor-rtcga.methylation .. _`bioconductor-rtcga.methylation/tags`: https://quay.io/repository/biocontainers/bioconductor-rtcga.methylation?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rtcga.methylation/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rtcga.methylation/README.html