:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rtreemix' .. highlight: bash bioconductor-rtreemix ===================== .. conda:recipe:: bioconductor-rtreemix :replaces_section_title: :noindex: Rtreemix\: Mutagenetic trees mixture models. :homepage: https://bioconductor.org/packages/3.18/bioc/html/Rtreemix.html :license: LGPL :recipe: /`bioconductor-rtreemix `_/`meta.yaml `_ :links: biotools: :biotools:`rtreemix`, doi: :doi:`10.1093/bioinformatics/btn410` Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross\-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models\, likelihood computations\, model comparisons\, waiting time estimations\, stability analysis\, etc. .. conda:package:: bioconductor-rtreemix |downloads_bioconductor-rtreemix| |docker_bioconductor-rtreemix| :versions: .. raw:: html
1.64.0-01.62.0-01.60.0-11.60.0-01.56.0-21.56.0-11.56.0-01.54.0-01.52.0-1 ``1.64.0-0``,  ``1.62.0-0``,  ``1.60.0-1``,  ``1.60.0-0``,  ``1.56.0-2``,  ``1.56.0-1``,  ``1.56.0-0``,  ``1.54.0-0``,  ``1.52.0-1``,  ``1.52.0-0``,  ``1.50.0-0``,  ``1.48.0-0``,  ``1.46.0-1``,  ``1.44.0-0``,  ``1.42.0-0``,  ``1.40.0-0``,  ``1.38.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0`` :depends bioconductor-graph: ``>=1.80.0,<1.81.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-hmisc: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rtreemix and update with:: mamba update bioconductor-rtreemix To create a new environment, run:: mamba create --name myenvname bioconductor-rtreemix with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rtreemix: (see `bioconductor-rtreemix/tags`_ for valid values for ````) .. |downloads_bioconductor-rtreemix| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rtreemix.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rtreemix :alt: (downloads) .. |docker_bioconductor-rtreemix| image:: https://quay.io/repository/biocontainers/bioconductor-rtreemix/status :target: https://quay.io/repository/biocontainers/bioconductor-rtreemix .. _`bioconductor-rtreemix/tags`: https://quay.io/repository/biocontainers/bioconductor-rtreemix?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rtreemix/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rtreemix/README.html