:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-rtrm' .. highlight: bash bioconductor-rtrm ================= .. conda:recipe:: bioconductor-rtrm :replaces_section_title: :noindex: Identification of Transcriptional Regulatory Modules from Protein\-Protein Interaction Networks :homepage: https://bioconductor.org/packages/3.18/bioc/html/rTRM.html :license: GPL-3 :recipe: /`bioconductor-rtrm `_/`meta.yaml `_ :links: biotools: :biotools:`rtrm` rTRM identifies transcriptional regulatory modules \(TRMs\) from protein\-protein interaction networks. .. conda:package:: bioconductor-rtrm |downloads_bioconductor-rtrm| |docker_bioconductor-rtrm| :versions: .. raw:: html
1.40.0-01.38.0-01.36.0-01.32.0-01.30.0-01.28.0-11.28.0-01.26.0-01.24.0-0 ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0`` .. raw:: html
:depends bioconductor-annotationdbi: ``>=1.64.0,<1.65.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dbi: :depends r-igraph: ``>=1.0`` :depends r-rsqlite: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-rtrm and update with:: mamba update bioconductor-rtrm To create a new environment, run:: mamba create --name myenvname bioconductor-rtrm with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-rtrm: (see `bioconductor-rtrm/tags`_ for valid values for ````) .. |downloads_bioconductor-rtrm| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-rtrm.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-rtrm :alt: (downloads) .. |docker_bioconductor-rtrm| image:: https://quay.io/repository/biocontainers/bioconductor-rtrm/status :target: https://quay.io/repository/biocontainers/bioconductor-rtrm .. _`bioconductor-rtrm/tags`: https://quay.io/repository/biocontainers/bioconductor-rtrm?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rtrm/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-rtrm/README.html