:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-sc3' .. highlight: bash bioconductor-sc3 ================ .. conda:recipe:: bioconductor-sc3 :replaces_section_title: :noindex: Single\-Cell Consensus Clustering :homepage: https://bioconductor.org/packages/3.14/bioc/html/SC3.html :license: GPL-3 :recipe: /`bioconductor-sc3 `_/`meta.yaml `_ :links: biotools: :biotools:`sc3` A tool for unsupervised clustering and analysis of single cell RNA\-Seq data. .. conda:package:: bioconductor-sc3 |downloads_bioconductor-sc3| |docker_bioconductor-sc3| :versions: .. raw:: html
1.22.0-11.22.0-01.20.0-01.18.0-11.18.0-01.16.0-01.14.0-01.12.0-11.10.0-0 ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-1``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.7.6-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-singlecellexperiment: ``>=1.16.0,<1.17.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-cluster: :depends r-doparallel: :depends r-dorng: :depends r-e1071: :depends r-foreach: :depends r-ggplot2: :depends r-pheatmap: ``>=1.0.8`` :depends r-rcpp: ``>=0.11.1`` :depends r-rcpparmadillo: :depends r-robustbase: :depends r-rocr: :depends r-rrcov: :depends r-shiny: :depends r-writexls: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-sc3 and update with:: conda update bioconductor-sc3 or use the docker container:: docker pull quay.io/biocontainers/bioconductor-sc3: (see `bioconductor-sc3/tags`_ for valid values for ````) .. |downloads_bioconductor-sc3| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-sc3.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-sc3 :alt: (downloads) .. |docker_bioconductor-sc3| image:: https://quay.io/repository/biocontainers/bioconductor-sc3/status :target: https://quay.io/repository/biocontainers/bioconductor-sc3 .. _`bioconductor-sc3/tags`: https://quay.io/repository/biocontainers/bioconductor-sc3?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sc3/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-sc3/README.html