:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-scater' .. highlight: bash bioconductor-scater =================== .. conda:recipe:: bioconductor-scater :replaces_section_title: :noindex: Single\-Cell Analysis Toolkit for Gene Expression Data in R :homepage: https://bioconductor.org/packages/3.14/bioc/html/scater.html :license: GPL-3 :recipe: /`bioconductor-scater `_/`meta.yaml `_ :links: biotools: :biotools:`scater` A collection of tools for doing various analyses of single\-cell RNA\-seq gene expression data\, with a focus on quality control and visualization. .. conda:package:: bioconductor-scater |downloads_bioconductor-scater| |docker_bioconductor-scater| :versions: .. raw:: html
1.22.0-01.20.0-01.18.6-01.18.0-01.16.0-01.14.0-01.12.2-01.10.1-01.10.0-0 ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.6-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.2-0``,  ``1.10.1-0``,  ``1.10.0-0``,  ``1.8.4-0``,  ``1.6.0-0``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-beachmat: ``>=2.10.0,<2.11.0`` :depends bioconductor-biocgenerics: ``>=0.40.0,<0.41.0`` :depends bioconductor-biocneighbors: ``>=1.12.0,<1.13.0`` :depends bioconductor-biocparallel: ``>=1.28.0,<1.29.0`` :depends bioconductor-biocsingular: ``>=1.10.0,<1.11.0`` :depends bioconductor-delayedarray: ``>=0.20.0,<0.21.0`` :depends bioconductor-delayedmatrixstats: ``>=1.16.0,<1.17.0`` :depends bioconductor-s4vectors: ``>=0.32.0,<0.33.0`` :depends bioconductor-scuttle: ``>=1.4.0,<1.5.0`` :depends bioconductor-singlecellexperiment: ``>=1.16.0,<1.17.0`` :depends bioconductor-summarizedexperiment: ``>=1.24.0,<1.25.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-ggbeeswarm: :depends r-ggplot2: :depends r-ggrepel: :depends r-gridextra: :depends r-matrix: :depends r-rcolorbrewer: :depends r-rlang: :depends r-rtsne: :depends r-viridis: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-scater and update with:: conda update bioconductor-scater or use the docker container:: docker pull quay.io/biocontainers/bioconductor-scater: (see `bioconductor-scater/tags`_ for valid values for ````) .. |downloads_bioconductor-scater| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-scater.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-scater :alt: (downloads) .. |docker_bioconductor-scater| image:: https://quay.io/repository/biocontainers/bioconductor-scater/status :target: https://quay.io/repository/biocontainers/bioconductor-scater .. _`bioconductor-scater/tags`: https://quay.io/repository/biocontainers/bioconductor-scater?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scater/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-scater/README.html