:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-sctgif' .. highlight: bash bioconductor-sctgif =================== .. conda:recipe:: bioconductor-sctgif :replaces_section_title: :noindex: Cell type annotation for unannotated single\-cell RNA\-Seq data :homepage: https://bioconductor.org/packages/3.18/bioc/html/scTGIF.html :license: Artistic-2.0 :recipe: /`bioconductor-sctgif `_/`meta.yaml `_ scTGIF connects the cells and the related gene functions without cell type label. .. conda:package:: bioconductor-sctgif |downloads_bioconductor-sctgif| |docker_bioconductor-sctgif| :versions: .. raw:: html
1.16.0-01.14.0-11.14.0-01.12.0-11.12.0-01.8.0-21.8.0-11.8.0-01.6.0-0 ``1.16.0-0``,  ``1.14.0-1``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.8.0-2``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biobase: ``>=2.62.0,<2.63.0a0`` :depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0`` :depends bioconductor-biocstyle: ``>=2.30.0,<2.31.0a0`` :depends bioconductor-gseabase: ``>=1.64.0,<1.65.0`` :depends bioconductor-gseabase: ``>=1.64.0,<1.65.0a0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-s4vectors: ``>=0.40.2,<0.41.0a0`` :depends bioconductor-schex: ``>=1.16.0,<1.17.0`` :depends bioconductor-schex: ``>=1.16.0,<1.17.0a0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0a0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc-ng: ``>=12`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends libstdcxx-ng: ``>=12`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-ggplot2: :depends r-igraph: :depends r-knitr: :depends r-msigdbr: :depends r-nntensor: :depends r-plotly: :depends r-rcolorbrewer: :depends r-rcpp: :depends r-rmarkdown: :depends r-scales: :depends r-tagcloud: :depends r-tibble: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-sctgif and update with:: mamba update bioconductor-sctgif To create a new environment, run:: mamba create --name myenvname bioconductor-sctgif with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-sctgif: (see `bioconductor-sctgif/tags`_ for valid values for ````) .. |downloads_bioconductor-sctgif| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-sctgif.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-sctgif :alt: (downloads) .. |docker_bioconductor-sctgif| image:: https://quay.io/repository/biocontainers/bioconductor-sctgif/status :target: https://quay.io/repository/biocontainers/bioconductor-sctgif .. _`bioconductor-sctgif/tags`: https://quay.io/repository/biocontainers/bioconductor-sctgif?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sctgif/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-sctgif/README.html