:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-scthi' .. highlight: bash bioconductor-scthi ================== .. conda:recipe:: bioconductor-scthi :replaces_section_title: :noindex: Indentification of significantly activated ligand\-receptor interactions across clusters of cells from single\-cell RNA sequencing data :homepage: https://bioconductor.org/packages/3.18/bioc/html/scTHI.html :license: GPL-2 :recipe: /`bioconductor-scthi `_/`meta.yaml `_ scTHI is an R package to identify active pairs of ligand\-receptors from single cells in order to study\,among others\, tumor\-host interactions. scTHI contains a set of signatures to classify cells from the tumor microenvironment. .. conda:package:: bioconductor-scthi |downloads_bioconductor-scthi| |docker_bioconductor-scthi| :versions: ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-rtsne: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-scthi and update with:: mamba update bioconductor-scthi To create a new environment, run:: mamba create --name myenvname bioconductor-scthi with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-scthi: (see `bioconductor-scthi/tags`_ for valid values for ````) .. |downloads_bioconductor-scthi| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-scthi.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-scthi :alt: (downloads) .. |docker_bioconductor-scthi| image:: https://quay.io/repository/biocontainers/bioconductor-scthi/status :target: https://quay.io/repository/biocontainers/bioconductor-scthi .. _`bioconductor-scthi/tags`: https://quay.io/repository/biocontainers/bioconductor-scthi?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-scthi/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-scthi/README.html