:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-setools'
.. highlight: bash

bioconductor-setools
====================

.. conda:recipe:: bioconductor-setools
   :replaces_section_title:
   :noindex:

   SEtools\: tools for working with SummarizedExperiment

   :homepage: https://bioconductor.org/packages/3.16/bioc/html/SEtools.html
   :license: GPL
   :recipe: /`bioconductor-setools <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-setools>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-setools/meta.yaml>`_

   This includes a set of tools for working with the SummarizedExperiment class\, including merging\, melting\, aggregation functions. Plotting functions historically in this package have been moved to the sechm package.


.. conda:package:: bioconductor-setools

   |downloads_bioconductor-setools| |docker_bioconductor-setools|

   :versions:
      
      

      ``1.12.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocparallel: ``>=1.32.0,<1.33.0``
   :depends bioconductor-deseq2: ``>=1.38.0,<1.39.0``
   :depends bioconductor-edger: ``>=3.40.0,<3.41.0``
   :depends bioconductor-s4vectors: ``>=0.36.0,<0.37.0``
   :depends bioconductor-sechm: ``>=1.6.0,<1.7.0``
   :depends bioconductor-summarizedexperiment: ``>=1.28.0,<1.29.0``
   :depends bioconductor-sva: ``>=3.46.0,<3.47.0``
   :depends r-base: ``>=4.2,<4.3.0a0``
   :depends r-circlize: 
   :depends r-data.table: 
   :depends r-matrix: 
   :depends r-openxlsx: 
   :depends r-pheatmap: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-setools

   and update with::

      conda update bioconductor-setools

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-setools:<tag>

   (see `bioconductor-setools/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-setools| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-setools.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-setools
   :alt:   (downloads)
.. |docker_bioconductor-setools| image:: https://quay.io/repository/biocontainers/bioconductor-setools/status
   :target: https://quay.io/repository/biocontainers/bioconductor-setools
.. _`bioconductor-setools/tags`: https://quay.io/repository/biocontainers/bioconductor-setools?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-setools";
        var versions = ["1.12.0","1.8.0","1.6.0","1.4.0","1.4.0"];
    </script>






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