:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-simbindprofiles' .. highlight: bash bioconductor-simbindprofiles ============================ .. conda:recipe:: bioconductor-simbindprofiles :replaces_section_title: :noindex: Similar Binding Profiles :homepage: https://bioconductor.org/packages/3.18/bioc/html/SimBindProfiles.html :license: GPL-3 :recipe: /`bioconductor-simbindprofiles `_/`meta.yaml `_ :links: biotools: :biotools:`simbindprofiles`, doi: :doi:`10.1038/nmeth.3252` SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling\, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach\, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding. .. conda:package:: bioconductor-simbindprofiles |downloads_bioconductor-simbindprofiles| |docker_bioconductor-simbindprofiles| :versions: .. raw:: html
1.40.0-01.38.0-01.36.0-01.32.0-01.30.0-01.28.0-11.28.0-01.26.0-01.24.0-0 ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-ringo: ``>=1.66.0,<1.67.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-mclust: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-simbindprofiles and update with:: mamba update bioconductor-simbindprofiles To create a new environment, run:: mamba create --name myenvname bioconductor-simbindprofiles with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-simbindprofiles: (see `bioconductor-simbindprofiles/tags`_ for valid values for ````) .. |downloads_bioconductor-simbindprofiles| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-simbindprofiles.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-simbindprofiles :alt: (downloads) .. |docker_bioconductor-simbindprofiles| image:: https://quay.io/repository/biocontainers/bioconductor-simbindprofiles/status :target: https://quay.io/repository/biocontainers/bioconductor-simbindprofiles .. _`bioconductor-simbindprofiles/tags`: https://quay.io/repository/biocontainers/bioconductor-simbindprofiles?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-simbindprofiles/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-simbindprofiles/README.html