:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-simd'
.. highlight: bash

bioconductor-simd
=================

.. conda:recipe:: bioconductor-simd
   :replaces_section_title:
   :noindex:

   Statistical Inferences with MeDIP\-seq Data \(SIMD\) to infer the methylation level for each CpG site

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/SIMD.html
   :license: GPL-3
   :recipe: /`bioconductor-simd <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-simd>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-simd/meta.yaml>`_

   This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP\-seq data. It uses statistical framework and EM algorithm\, to identify differentially expressed CpG sites. The methods on this package are described in the article \'Methylation\-level Inferences and Detection of Differential Methylation with Medip\-seq Data\' by Yan Zhou\, Jiadi Zhu\, Mingtao Zhao\, Baoxue Zhang\, Chunfu Jiang and Xiyan Yang \(2018\, pending publication\).


.. conda:package:: bioconductor-simd

   |downloads_bioconductor-simd| |docker_bioconductor-simd|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.12.0-1</code>,  <code>1.12.0-0</code>,  <code>1.10.0-0</code>,  <code>1.8.0-1</code>,  <code>1.8.0-0</code>,  <code>1.6.0-0</code>,  <code>1.4.0-0</code>,  <code>1.2.0-1</code>,  <code>1.2.0-0</code>,  </span></summary>
      

      ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-edger: ``>=3.36.0,<3.37.0``
   :depends bioconductor-methylmnm: ``>=1.32.0,<1.33.0``
   :depends libblas: ``>=3.8.0,<4.0a0``
   :depends libgcc-ng: ``>=10.3.0``
   :depends liblapack: ``>=3.8.0,<4.0a0``
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-statmod: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-simd

   and update with::

      conda update bioconductor-simd

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-simd:<tag>

   (see `bioconductor-simd/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-simd| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-simd.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-simd
   :alt:   (downloads)
.. |docker_bioconductor-simd| image:: https://quay.io/repository/biocontainers/bioconductor-simd/status
   :target: https://quay.io/repository/biocontainers/bioconductor-simd
.. _`bioconductor-simd/tags`: https://quay.io/repository/biocontainers/bioconductor-simd?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-simd";
        var versions = ["1.12.0","1.12.0","1.10.0","1.8.0","1.8.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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