:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-simd' .. highlight: bash bioconductor-simd ================= .. conda:recipe:: bioconductor-simd :replaces_section_title: :noindex: Statistical Inferences with MeDIP\-seq Data \(SIMD\) to infer the methylation level for each CpG site :homepage: https://bioconductor.org/packages/3.14/bioc/html/SIMD.html :license: GPL-3 :recipe: /`bioconductor-simd `_/`meta.yaml `_ This package provides a inferential analysis method for detecting differentially expressed CpG sites in MeDIP\-seq data. It uses statistical framework and EM algorithm\, to identify differentially expressed CpG sites. The methods on this package are described in the article \'Methylation\-level Inferences and Detection of Differential Methylation with Medip\-seq Data\' by Yan Zhou\, Jiadi Zhu\, Mingtao Zhao\, Baoxue Zhang\, Chunfu Jiang and Xiyan Yang \(2018\, pending publication\). .. conda:package:: bioconductor-simd |downloads_bioconductor-simd| |docker_bioconductor-simd| :versions: .. raw:: html
1.12.0-11.12.0-01.10.0-01.8.0-11.8.0-01.6.0-01.4.0-01.2.0-11.2.0-0 ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-1``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0`` .. raw:: html
:depends bioconductor-edger: ``>=3.36.0,<3.37.0`` :depends bioconductor-methylmnm: ``>=1.32.0,<1.33.0`` :depends libblas: ``>=3.8.0,<4.0a0`` :depends libgcc-ng: ``>=10.3.0`` :depends liblapack: ``>=3.8.0,<4.0a0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-statmod: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-simd and update with:: conda update bioconductor-simd or use the docker container:: docker pull quay.io/biocontainers/bioconductor-simd: (see `bioconductor-simd/tags`_ for valid values for ````) .. |downloads_bioconductor-simd| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-simd.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-simd :alt: (downloads) .. |docker_bioconductor-simd| image:: https://quay.io/repository/biocontainers/bioconductor-simd/status :target: https://quay.io/repository/biocontainers/bioconductor-simd .. _`bioconductor-simd/tags`: https://quay.io/repository/biocontainers/bioconductor-simd?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-simd/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-simd/README.html