:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-similarpeak' .. highlight: bash bioconductor-similarpeak ======================== .. conda:recipe:: bioconductor-similarpeak :replaces_section_title: :noindex: Metrics to estimate a level of similarity between two ChIP\-Seq profiles :homepage: https://bioconductor.org/packages/3.18/bioc/html/similaRpeak.html :license: Artistic-2.0 :recipe: /`bioconductor-similarpeak `_/`meta.yaml `_ :links: biotools: :biotools:`similarpeak`, doi: :doi:`10.1371/journal.pcbi.1004751` This package calculates metrics which quantify the level of similarity between ChIP\-Seq profiles. More specifically\, the package implements six pseudometrics specialized in pattern similarity detection in ChIP\-Seq profiles. .. conda:package:: bioconductor-similarpeak |downloads_bioconductor-similarpeak| |docker_bioconductor-similarpeak| :versions: .. raw:: html
1.34.0-01.32.0-01.30.0-01.26.0-01.24.0-01.22.0-11.22.0-01.20.0-01.18.0-0 ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-1``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-1``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0`` .. raw:: html
:depends r-base: ``>=4.3,<4.4.0a0`` :depends r-r6: ``>=2.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-similarpeak and update with:: mamba update bioconductor-similarpeak To create a new environment, run:: mamba create --name myenvname bioconductor-similarpeak with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-similarpeak: (see `bioconductor-similarpeak/tags`_ for valid values for ````) .. |downloads_bioconductor-similarpeak| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-similarpeak.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-similarpeak :alt: (downloads) .. |docker_bioconductor-similarpeak| image:: https://quay.io/repository/biocontainers/bioconductor-similarpeak/status :target: https://quay.io/repository/biocontainers/bioconductor-similarpeak .. _`bioconductor-similarpeak/tags`: https://quay.io/repository/biocontainers/bioconductor-similarpeak?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-similarpeak/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-similarpeak/README.html