:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-snplocs.hsapiens.dbsnp149.grch38' .. highlight: bash bioconductor-snplocs.hsapiens.dbsnp149.grch38 ============================================= .. conda:recipe:: bioconductor-snplocs.hsapiens.dbsnp149.grch38 :replaces_section_title: :noindex: SNP locations for Homo sapiens \(dbSNP Build 149\) :homepage: https://bioconductor.org/packages/3.18/data/annotation/html/SNPlocs.Hsapiens.dbSNP149.GRCh38.html :license: Artistic-2.0 :recipe: /`bioconductor-snplocs.hsapiens.dbsnp149.grch38 `_/`meta.yaml `_ SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8\-12\, 2016\, and contain SNPs mapped to reference genome GRCh38.p7 \(a patched version of GRCh38 that doesn\'t alter chromosomes 1\-22\, X\, Y\, MT\). Note that these SNPs can be \"injected\" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. .. conda:package:: bioconductor-snplocs.hsapiens.dbsnp149.grch38 |downloads_bioconductor-snplocs.hsapiens.dbsnp149.grch38| |docker_bioconductor-snplocs.hsapiens.dbsnp149.grch38| :versions: .. raw:: html
0.99.20-120.99.20-110.99.20-100.99.20-90.99.20-80.99.20-70.99.20-60.99.20-50.99.20-4 ``0.99.20-12``,  ``0.99.20-11``,  ``0.99.20-10``,  ``0.99.20-9``,  ``0.99.20-8``,  ``0.99.20-7``,  ``0.99.20-6``,  ``0.99.20-5``,  ``0.99.20-4``,  ``0.99.20-3``,  ``0.99.20-2``,  ``0.99.20-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0`` :depends bioconductor-bsgenome: ``>=1.70.0,<1.71.0`` :depends bioconductor-data-packages: ``>=20231203`` :depends bioconductor-genomeinfodb: ``>=1.38.0,<1.39.0`` :depends bioconductor-genomicranges: ``>=1.54.0,<1.55.0`` :depends bioconductor-iranges: ``>=2.36.0,<2.37.0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends curl: :depends r-base: ``>=4.3,<4.4.0a0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-snplocs.hsapiens.dbsnp149.grch38 and update with:: mamba update bioconductor-snplocs.hsapiens.dbsnp149.grch38 To create a new environment, run:: mamba create --name myenvname bioconductor-snplocs.hsapiens.dbsnp149.grch38 with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38: (see `bioconductor-snplocs.hsapiens.dbsnp149.grch38/tags`_ for valid values for ````) .. |downloads_bioconductor-snplocs.hsapiens.dbsnp149.grch38| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-snplocs.hsapiens.dbsnp149.grch38.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-snplocs.hsapiens.dbsnp149.grch38 :alt: (downloads) .. |docker_bioconductor-snplocs.hsapiens.dbsnp149.grch38| image:: https://quay.io/repository/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38/status :target: https://quay.io/repository/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38 .. _`bioconductor-snplocs.hsapiens.dbsnp149.grch38/tags`: https://quay.io/repository/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-snplocs.hsapiens.dbsnp149.grch38/README.html