:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-spatialcpie'
.. highlight: bash

bioconductor-spatialcpie
========================

.. conda:recipe:: bioconductor-spatialcpie
   :replaces_section_title:
   :noindex:

   Cluster analysis of Spatial Transcriptomics data

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/SpatialCPie.html
   :license: MIT + file LICENSE
   :recipe: /`bioconductor-spatialcpie <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-spatialcpie>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-spatialcpie/meta.yaml>`_

   SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny \"gadget\" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.


.. conda:package:: bioconductor-spatialcpie

   |downloads_bioconductor-spatialcpie| |docker_bioconductor-spatialcpie|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.18.0-0</code>,  <code>1.16.0-0</code>,  <code>1.14.0-0</code>,  <code>1.10.0-0</code>,  <code>1.8.0-0</code>,  <code>1.6.0-1</code>,  <code>1.6.0-0</code>,  <code>1.4.0-0</code>,  <code>1.2.0-0</code>,  </span></summary>
      

      ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-0``,  ``1.0.0-1``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-colorspace: ``>=1.3-2``
   :depends r-data.table: ``>=1.12.2``
   :depends r-digest: ``>=0.6.21``
   :depends r-dplyr: ``>=0.7.6``
   :depends r-ggforce: ``>=0.3.0``
   :depends r-ggiraph: ``>=0.5.0``
   :depends r-ggplot2: ``>=3.0.0``
   :depends r-ggrepel: ``>=0.8.0``
   :depends r-igraph: ``>=1.2.2``
   :depends r-lpsolve: ``>=5.6.13``
   :depends r-purrr: ``>=0.2.5``
   :depends r-readr: ``>=1.1.1``
   :depends r-rlang: ``>=0.2.2``
   :depends r-shiny: ``>=1.1.0``
   :depends r-shinycssloaders: ``>=0.2.0``
   :depends r-shinyjs: ``>=1.0``
   :depends r-shinywidgets: ``>=0.4.8``
   :depends r-tibble: ``>=1.4.2``
   :depends r-tidyr: ``>=0.8.1``
   :depends r-tidyselect: ``>=0.2.4``
   :depends r-zeallot: ``>=0.1.0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-spatialcpie

   and update with::

      mamba update bioconductor-spatialcpie

  To create a new environment, run::

      mamba create --name myenvname bioconductor-spatialcpie

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-spatialcpie:<tag>

   (see `bioconductor-spatialcpie/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-spatialcpie| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-spatialcpie.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-spatialcpie
   :alt:   (downloads)
.. |docker_bioconductor-spatialcpie| image:: https://quay.io/repository/biocontainers/bioconductor-spatialcpie/status
   :target: https://quay.io/repository/biocontainers/bioconductor-spatialcpie
.. _`bioconductor-spatialcpie/tags`: https://quay.io/repository/biocontainers/bioconductor-spatialcpie?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-spatialcpie";
        var versions = ["1.18.0","1.16.0","1.14.0","1.10.0","1.8.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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