:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-ssnappy'
.. highlight: bash

bioconductor-ssnappy
====================

.. conda:recipe:: bioconductor-ssnappy
   :replaces_section_title:
   :noindex:

   Single Sample directioNAl Pathway Perturbation analYsis

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/sSNAPPY.html
   :license: GPL-3
   :recipe: /`bioconductor-ssnappy <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ssnappy>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ssnappy/meta.yaml>`_

   A single sample pathway perturbation testing method for RNA\-seq data. The method propagates changes in gene expression down gene\-set topologies to compute single\-sample directional pathway perturbation scores that reflect potential direction of change. Perturbation scores can be used to test significance of pathway perturbation at both individual\-sample and treatment levels.


.. conda:package:: bioconductor-ssnappy

   |downloads_bioconductor-ssnappy| |docker_bioconductor-ssnappy|

   :versions:
      
      

      ``1.6.1-0``,  ``1.4.1-0``,  ``1.2.0-1``,  ``1.2.0-0``

      

   
   :depends bioconductor-edger: ``>=4.0.0,<4.1.0``
   :depends bioconductor-graphite: ``>=1.48.0,<1.49.0``
   :depends bioconductor-org.hs.eg.db: ``>=3.18.0,<3.19.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-dplyr: ``>=1.1``
   :depends r-ggforce: 
   :depends r-ggplot2: 
   :depends r-ggraph: 
   :depends r-gtools: 
   :depends r-igraph: 
   :depends r-magrittr: 
   :depends r-pheatmap: 
   :depends r-reshape2: 
   :depends r-rlang: 
   :depends r-stringr: 
   :depends r-tibble: 
   :depends r-tidyr: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-ssnappy

   and update with::

      mamba update bioconductor-ssnappy

  To create a new environment, run::

      mamba create --name myenvname bioconductor-ssnappy

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-ssnappy:<tag>

   (see `bioconductor-ssnappy/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-ssnappy| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ssnappy.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-ssnappy
   :alt:   (downloads)
.. |docker_bioconductor-ssnappy| image:: https://quay.io/repository/biocontainers/bioconductor-ssnappy/status
   :target: https://quay.io/repository/biocontainers/bioconductor-ssnappy
.. _`bioconductor-ssnappy/tags`: https://quay.io/repository/biocontainers/bioconductor-ssnappy?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-ssnappy";
        var versions = ["1.6.1","1.4.1","1.2.0","1.2.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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