:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-stjudem'
.. highlight: bash

bioconductor-stjudem
====================

.. conda:recipe:: bioconductor-stjudem
   :replaces_section_title:
   :noindex:

   Microarray Data from Yeoh et al. in MACAT format

   :homepage: https://bioconductor.org/packages/3.18/data/experiment/html/stjudem.html
   :license: LGPL (>= 2)
   :recipe: /`bioconductor-stjudem <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-stjudem>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-stjudem/meta.yaml>`_

   This is a microarray data set on acute lymphoblastic leukemia\, published in 2002 \(Yeoh et al.Cancer Cell 2002\). The experiments were conducted in the St.Jude Children\'s Research Hospital\, Memphis\, Tenessee\, USA. The raw data was preprocessed by variance stabilizing normalization \(Huber et al.\) on probe and subsequent summarization of probe expression values into probe set expression values using median polish.


.. conda:package:: bioconductor-stjudem

   |downloads_bioconductor-stjudem| |docker_bioconductor-stjudem|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.42.0-0</code>,  <code>1.40.0-0</code>,  <code>1.37.0-0</code>,  <code>1.34.0-1</code>,  <code>1.34.0-0</code>,  <code>1.32.0-0</code>,  <code>1.30.0-1</code>,  <code>1.30.0-0</code>,  <code>1.29.0-0</code>,  </span></summary>
      

      ``1.42.0-0``,  ``1.40.0-0``,  ``1.37.0-0``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.30.0-0``,  ``1.29.0-0``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-1``,  ``1.24.0-0``,  ``1.22.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-data-packages: ``>=20231203``
   :depends curl: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-stjudem

   and update with::

      mamba update bioconductor-stjudem

  To create a new environment, run::

      mamba create --name myenvname bioconductor-stjudem

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-stjudem:<tag>

   (see `bioconductor-stjudem/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-stjudem| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-stjudem.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-stjudem
   :alt:   (downloads)
.. |docker_bioconductor-stjudem| image:: https://quay.io/repository/biocontainers/bioconductor-stjudem/status
   :target: https://quay.io/repository/biocontainers/bioconductor-stjudem
.. _`bioconductor-stjudem/tags`: https://quay.io/repository/biocontainers/bioconductor-stjudem?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-stjudem";
        var versions = ["1.42.0","1.40.0","1.37.0","1.34.0","1.34.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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