:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-streamer' .. highlight: bash bioconductor-streamer ===================== .. conda:recipe:: bioconductor-streamer :replaces_section_title: :noindex: Enabling stream processing of large files :homepage: https://bioconductor.org/packages/3.20/bioc/html/Streamer.html :license: Artistic-2.0 :recipe: /`bioconductor-streamer `_/`meta.yaml `_ :links: biotools: :biotools:`streamer`, doi: :doi:`10.1038/nmeth.3252` Large data files can be difficult to work with in R\, where data generally resides in memory. This package encourages a style of programming where data is \'streamed\' from disk into R via a \`producer\' and through a series of \`consumers\' that\, typically reduce the original data to a manageable size. The package provides useful Producer and Consumer stream components for operations such as data input\, sampling\, indexing\, and transformation\; see package\?Streamer for details. .. conda:package:: bioconductor-streamer |downloads_bioconductor-streamer| |docker_bioconductor-streamer| :versions: .. raw:: html
1.52.0-01.48.0-01.46.0-01.44.0-11.44.0-01.40.0-21.40.0-11.40.0-01.38.0-0 ``1.52.0-0``,  ``1.48.0-0``,  ``1.46.0-0``,  ``1.44.0-1``,  ``1.44.0-0``,  ``1.40.0-2``,  ``1.40.0-1``,  ``1.40.0-0``,  ``1.38.0-0``,  ``1.36.0-1``,  ``1.36.0-0``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-1``,  ``1.28.0-0``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0`` .. raw:: html
:depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0`` :depends bioconductor-biocgenerics: ``>=0.52.0,<0.53.0a0`` :depends bioconductor-graph: ``>=1.84.0,<1.85.0`` :depends bioconductor-graph: ``>=1.84.0,<1.85.0a0`` :depends bioconductor-rbgl: ``>=1.82.0,<1.83.0`` :depends bioconductor-rbgl: ``>=1.82.0,<1.83.0a0`` :depends libblas: ``>=3.9.0,<4.0a0`` :depends libgcc: ``>=13`` :depends liblapack: ``>=3.9.0,<4.0a0`` :depends r-base: ``>=4.4,<4.5.0a0`` :requirements: :additional platforms: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-streamer and update with:: mamba update bioconductor-streamer To create a new environment, run:: mamba create --name myenvname bioconductor-streamer with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-streamer: (see `bioconductor-streamer/tags`_ for valid values for ````) .. |downloads_bioconductor-streamer| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-streamer.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-streamer :alt: (downloads) .. |docker_bioconductor-streamer| image:: https://quay.io/repository/biocontainers/bioconductor-streamer/status :target: https://quay.io/repository/biocontainers/bioconductor-streamer .. _`bioconductor-streamer/tags`: https://quay.io/repository/biocontainers/bioconductor-streamer?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-streamer/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-streamer/README.html