:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-structtoolbox'
.. highlight: bash

bioconductor-structtoolbox
==========================

.. conda:recipe:: bioconductor-structtoolbox
   :replaces_section_title:
   :noindex:

   Data processing \& analysis tools for Metabolomics and other omics

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/structToolbox.html
   :license: GPL-3
   :recipe: /`bioconductor-structtoolbox <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-structtoolbox>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-structtoolbox/meta.yaml>`_

   An extensive set of data \(pre\-\)processing and analysis methods and tools for metabolomics and other omics\, with a strong emphasis on statistics and machine learning. This toolbox allows the user to build extensive and standardised workflows for data analysis. The methods and tools have been implemented using class\-based templates provided by the struct \(Statistics in R Using Class\-based Templates\) package. The toolbox includes pre\-processing methods \(e.g. signal drift and batch correction\, normalisation\, missing value imputation and scaling\)\, univariate \(e.g. ttest\, various forms of ANOVA\, Kruskal–Wallis test and more\) and multivariate statistical methods \(e.g. PCA and PLS\, including cross\-validation and permutation testing\) as well as machine learning methods \(e.g. Support Vector Machines\). The STATistics Ontology \(STATO\) has been integrated and implemented to provide standardised definitions for the different methods\, inputs and outputs.


.. conda:package:: bioconductor-structtoolbox

   |downloads_bioconductor-structtoolbox| |docker_bioconductor-structtoolbox|

   :versions:
      
      
      .. raw:: html

         <details><summary><span class="truncated-version-list"><code>1.14.0-0</code>,  <code>1.12.2-0</code>,  <code>1.12.0-0</code>,  <code>1.10.1-0</code>,  <code>1.10.0-1</code>,  <code>1.10.0-0</code>,  <code>1.6.1-0</code>,  <code>1.6.0-1</code>,  <code>1.6.0-0</code>,  </span></summary>
      

      ``1.14.0-0``,  ``1.12.2-0``,  ``1.12.0-0``,  ``1.10.1-0``,  ``1.10.0-1``,  ``1.10.0-0``,  ``1.6.1-0``,  ``1.6.0-1``,  ``1.6.0-0``,  ``1.4.3-0``,  ``1.4.2-0``,  ``1.4.1-0``,  ``1.4.0-1``,  ``1.4.0-0``,  ``1.2.0-2``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.1-0``,  ``1.0.0-0``

      
      .. raw:: html

         </details>
      

   
   :depends bioconductor-struct: ``>=1.14.0,<1.15.0``
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ggplot2: 
   :depends r-ggthemes: 
   :depends r-gridextra: 
   :depends r-scales: 
   :depends r-sp: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-structtoolbox

   and update with::

      mamba update bioconductor-structtoolbox

  To create a new environment, run::

      mamba create --name myenvname bioconductor-structtoolbox

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-structtoolbox:<tag>

   (see `bioconductor-structtoolbox/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-structtoolbox| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-structtoolbox.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-structtoolbox
   :alt:   (downloads)
.. |docker_bioconductor-structtoolbox| image:: https://quay.io/repository/biocontainers/bioconductor-structtoolbox/status
   :target: https://quay.io/repository/biocontainers/bioconductor-structtoolbox
.. _`bioconductor-structtoolbox/tags`: https://quay.io/repository/biocontainers/bioconductor-structtoolbox?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-structtoolbox";
        var versions = ["1.14.0","1.12.2","1.12.0","1.10.1","1.10.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

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