:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-trajectoryutils' .. highlight: bash bioconductor-trajectoryutils ============================ .. conda:recipe:: bioconductor-trajectoryutils :replaces_section_title: :noindex: Single\-Cell Trajectory Analysis Utilities :homepage: https://bioconductor.org/packages/3.18/bioc/html/TrajectoryUtils.html :license: GPL-3 :recipe: /`bioconductor-trajectoryutils `_/`meta.yaml `_ Implements low\-level utilities for single\-cell trajectory analysis\, primarily intended for re\-use inside higher\-level packages. Include a function to create a cluster\-level minimum spanning tree and data structures to hold pseudotime inference results. .. conda:package:: bioconductor-trajectoryutils |downloads_bioconductor-trajectoryutils| |docker_bioconductor-trajectoryutils| :versions: ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-0``,  ``1.2.0-0``,  ``1.0.0-0`` :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0`` :depends bioconductor-singlecellexperiment: ``>=1.24.0,<1.25.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-igraph: :depends r-matrix: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-trajectoryutils and update with:: mamba update bioconductor-trajectoryutils To create a new environment, run:: mamba create --name myenvname bioconductor-trajectoryutils with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-trajectoryutils: (see `bioconductor-trajectoryutils/tags`_ for valid values for ````) .. |downloads_bioconductor-trajectoryutils| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-trajectoryutils.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-trajectoryutils :alt: (downloads) .. |docker_bioconductor-trajectoryutils| image:: https://quay.io/repository/biocontainers/bioconductor-trajectoryutils/status :target: https://quay.io/repository/biocontainers/bioconductor-trajectoryutils .. _`bioconductor-trajectoryutils/tags`: https://quay.io/repository/biocontainers/bioconductor-trajectoryutils?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trajectoryutils/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-trajectoryutils/README.html