:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-trena' .. highlight: bash bioconductor-trena ================== .. conda:recipe:: bioconductor-trena :replaces_section_title: :noindex: Fit transcriptional regulatory networks using gene expression\, priors\, machine learning :homepage: https://bioconductor.org/packages/3.14/bioc/html/trena.html :license: GPL-3 :recipe: /`bioconductor-trena `_/`meta.yaml `_ Methods for reconstructing transcriptional regulatory networks\, especially in species for which genome\-wide TF binding site information is available. .. conda:package:: bioconductor-trena |downloads_bioconductor-trena| |docker_bioconductor-trena| :versions: ``1.16.0-0``,  ``1.14.0-0``,  ``1.11.6-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.4.2-0`` :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0`` :depends bioconductor-biomart: ``>=2.50.0,<2.51.0`` :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0`` :depends bioconductor-bsgenome: ``>=1.62.0,<1.63.0`` :depends bioconductor-bsgenome.hsapiens.ucsc.hg19: ``>=1.4.0,<1.5.0`` :depends bioconductor-bsgenome.hsapiens.ucsc.hg38: ``>=1.4.0,<1.5.0`` :depends bioconductor-bsgenome.mmusculus.ucsc.mm10: ``>=1.4.0,<1.5.0`` :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0`` :depends bioconductor-motifdb: ``>=1.36.0,<1.37.0`` :depends bioconductor-org.hs.eg.db: ``>=3.14.0,<3.15.0`` :depends bioconductor-snplocs.hsapiens.dbsnp150.grch38: ``>=0.99.0,<0.100.0`` :depends r-base: ``>=4.1,<4.2.0a0`` :depends r-dbi: :depends r-glmnet: ``>=2.0.3`` :depends r-lassopv: :depends r-randomforest: :depends r-rmysql: :depends r-rpostgresql: :depends r-rsqlite: :depends r-vbsr: :depends r-wgcna: :depends r-xgboost: :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bioconductor-trena and update with:: conda update bioconductor-trena or use the docker container:: docker pull quay.io/biocontainers/bioconductor-trena: (see `bioconductor-trena/tags`_ for valid values for ````) .. |downloads_bioconductor-trena| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-trena.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-trena :alt: (downloads) .. |docker_bioconductor-trena| image:: https://quay.io/repository/biocontainers/bioconductor-trena/status :target: https://quay.io/repository/biocontainers/bioconductor-trena .. _`bioconductor-trena/tags`: https://quay.io/repository/biocontainers/bioconductor-trena?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-trena/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-trena/README.html