:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-trena'
.. highlight: bash

bioconductor-trena
==================

.. conda:recipe:: bioconductor-trena
   :replaces_section_title:
   :noindex:

   Fit transcriptional regulatory networks using gene expression\, priors\, machine learning

   :homepage: https://bioconductor.org/packages/3.14/bioc/html/trena.html
   :license: GPL-3
   :recipe: /`bioconductor-trena <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-trena>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-trena/meta.yaml>`_

   Methods for reconstructing transcriptional regulatory networks\, especially in species for which genome\-wide TF binding site information is available.


.. conda:package:: bioconductor-trena

   |downloads_bioconductor-trena| |docker_bioconductor-trena|

   :versions:
      
      

      ``1.16.0-0``,  ``1.14.0-0``,  ``1.11.6-0``,  ``1.8.0-0``,  ``1.6.1-0``,  ``1.4.2-0``

      

   
   :depends bioconductor-annotationdbi: ``>=1.56.0,<1.57.0``
   :depends bioconductor-biomart: ``>=2.50.0,<2.51.0``
   :depends bioconductor-biostrings: ``>=2.62.0,<2.63.0``
   :depends bioconductor-bsgenome: ``>=1.62.0,<1.63.0``
   :depends bioconductor-bsgenome.hsapiens.ucsc.hg19: ``>=1.4.0,<1.5.0``
   :depends bioconductor-bsgenome.hsapiens.ucsc.hg38: ``>=1.4.0,<1.5.0``
   :depends bioconductor-bsgenome.mmusculus.ucsc.mm10: ``>=1.4.0,<1.5.0``
   :depends bioconductor-genomicranges: ``>=1.46.0,<1.47.0``
   :depends bioconductor-motifdb: ``>=1.36.0,<1.37.0``
   :depends bioconductor-org.hs.eg.db: ``>=3.14.0,<3.15.0``
   :depends bioconductor-snplocs.hsapiens.dbsnp150.grch38: ``>=0.99.0,<0.100.0``
   :depends r-base: ``>=4.1,<4.2.0a0``
   :depends r-dbi: 
   :depends r-glmnet: ``>=2.0.3``
   :depends r-lassopv: 
   :depends r-randomforest: 
   :depends r-rmysql: 
   :depends r-rpostgresql: 
   :depends r-rsqlite: 
   :depends r-vbsr: 
   :depends r-wgcna: 
   :depends r-xgboost: 
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install bioconductor-trena

   and update with::

      conda update bioconductor-trena

   or use the docker container::

      docker pull quay.io/biocontainers/bioconductor-trena:<tag>

   (see `bioconductor-trena/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-trena| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-trena.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-trena
   :alt:   (downloads)
.. |docker_bioconductor-trena| image:: https://quay.io/repository/biocontainers/bioconductor-trena/status
   :target: https://quay.io/repository/biocontainers/bioconductor-trena
.. _`bioconductor-trena/tags`: https://quay.io/repository/biocontainers/bioconductor-trena?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-trena";
        var versions = ["1.16.0","1.14.0","1.11.6","1.8.0","1.6.1"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
-----------------

Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
   :target: http://bioconda.github.io/recipes/bioconductor-trena/README.html