:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-ttmap' .. highlight: bash bioconductor-ttmap ================== .. conda:recipe:: bioconductor-ttmap :replaces_section_title: :noindex: Two\-Tier Mapper\: a clustering tool based on topological data analysis :homepage: https://bioconductor.org/packages/3.18/bioc/html/TTMap.html :license: GPL-2 :recipe: /`bioconductor-ttmap `_/`meta.yaml `_ TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free. .. conda:package:: bioconductor-ttmap |downloads_bioconductor-ttmap| |docker_bioconductor-ttmap| :versions: .. raw:: html
1.24.0-01.22.0-01.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-0 ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-0``,  ``1.16.0-0``,  ``1.14.0-0``,  ``1.12.0-1``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.8.0-0``,  ``1.6.0-1``,  ``1.4.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-colorramps: :depends r-rgl: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-ttmap and update with:: mamba update bioconductor-ttmap To create a new environment, run:: mamba create --name myenvname bioconductor-ttmap with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-ttmap: (see `bioconductor-ttmap/tags`_ for valid values for ````) .. |downloads_bioconductor-ttmap| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-ttmap.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-ttmap :alt: (downloads) .. |docker_bioconductor-ttmap| image:: https://quay.io/repository/biocontainers/bioconductor-ttmap/status :target: https://quay.io/repository/biocontainers/bioconductor-ttmap .. _`bioconductor-ttmap/tags`: https://quay.io/repository/biocontainers/bioconductor-ttmap?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-ttmap/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-ttmap/README.html