:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-variancepartition' .. highlight: bash bioconductor-variancepartition ============================== .. conda:recipe:: bioconductor-variancepartition :replaces_section_title: :noindex: Quantify and interpret drivers of variation in multilevel gene expression experiments :homepage: https://bioconductor.org/packages/3.18/bioc/html/variancePartition.html :license: GPL-2 :recipe: /`bioconductor-variancepartition `_/`meta.yaml `_ :links: biotools: :biotools:`variancepartition` Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses a linear mixed model to quantify variation in gene expression attributable to individual\, tissue\, time point\, or technical variables. Includes dream differential expression analysis for repeated measures. .. conda:package:: bioconductor-variancepartition |downloads_bioconductor-variancepartition| |docker_bioconductor-variancepartition| :versions: .. raw:: html
1.32.2-01.30.2-01.28.0-01.24.0-01.22.0-01.20.0-11.20.0-01.18.0-01.16.0-0 ``1.32.2-0``,  ``1.30.2-0``,  ``1.28.0-0``,  ``1.24.0-0``,  ``1.22.0-0``,  ``1.20.0-1``,  ``1.20.0-0``,  ``1.18.0-0``,  ``1.16.0-0``,  ``1.14.1-0``,  ``1.14.0-1``,  ``1.12.3-0``,  ``1.12.0-0``,  ``1.10.4-0``,  ``1.8.1-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends r-aod: :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-corpcor: :depends r-fancova: :depends r-ggplot2: :depends r-gplots: :depends r-iterators: :depends r-lme4: ``>=1.1.33`` :depends r-lmertest: :depends r-mass: :depends r-matrix: ``>=1.4.0`` :depends r-matrixstats: :depends r-pbkrtest: ``>=0.4-4`` :depends r-rdpack: :depends r-remacor: ``>=0.0.15`` :depends r-reshape2: :depends r-rhpcblasctl: :depends r-rlang: :depends r-scales: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-variancepartition and update with:: mamba update bioconductor-variancepartition To create a new environment, run:: mamba create --name myenvname bioconductor-variancepartition with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-variancepartition: (see `bioconductor-variancepartition/tags`_ for valid values for ````) .. |downloads_bioconductor-variancepartition| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-variancepartition.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-variancepartition :alt: (downloads) .. |docker_bioconductor-variancepartition| image:: https://quay.io/repository/biocontainers/bioconductor-variancepartition/status :target: https://quay.io/repository/biocontainers/bioconductor-variancepartition .. _`bioconductor-variancepartition/tags`: https://quay.io/repository/biocontainers/bioconductor-variancepartition?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-variancepartition/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-variancepartition/README.html