:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bioconductor-watermelon' .. highlight: bash bioconductor-watermelon ======================= .. conda:recipe:: bioconductor-watermelon :replaces_section_title: :noindex: Illumina 450 and EPIC methylation array normalization and metrics :homepage: https://bioconductor.org/packages/3.18/bioc/html/wateRmelon.html :license: GPL-3 :recipe: /`bioconductor-watermelon `_/`meta.yaml `_ :links: biotools: :biotools:`watermelon` 15 flavours of betas and three performance metrics\, with methods for objects produced by methylumi and minfi packages. .. conda:package:: bioconductor-watermelon |downloads_bioconductor-watermelon| |docker_bioconductor-watermelon| :versions: .. raw:: html
2.8.0-02.6.0-02.4.0-02.0.0-11.36.0-01.34.0-11.34.0-01.32.0-01.30.0-0 ``2.8.0-0``,  ``2.6.0-0``,  ``2.4.0-0``,  ``2.0.0-1``,  ``1.36.0-0``,  ``1.34.0-1``,  ``1.34.0-0``,  ``1.32.0-0``,  ``1.30.0-0``,  ``1.28.0-1``,  ``1.26.0-0``,  ``1.24.0-0``,  ``1.22.0-0`` .. raw:: html
:depends bioconductor-biobase: ``>=2.62.0,<2.63.0`` :depends bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19: ``>=0.6.0,<0.7.0`` :depends bioconductor-illuminaio: ``>=0.44.0,<0.45.0`` :depends bioconductor-limma: ``>=3.58.0,<3.59.0`` :depends bioconductor-lumi: ``>=2.54.0,<2.55.0`` :depends bioconductor-methylumi: ``>=2.48.0,<2.49.0`` :depends bioconductor-roc: ``>=1.78.0,<1.79.0`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-matrixstats: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bioconductor-watermelon and update with:: mamba update bioconductor-watermelon To create a new environment, run:: mamba create --name myenvname bioconductor-watermelon with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bioconductor-watermelon: (see `bioconductor-watermelon/tags`_ for valid values for ````) .. |downloads_bioconductor-watermelon| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-watermelon.svg?style=flat :target: https://anaconda.org/bioconda/bioconductor-watermelon :alt: (downloads) .. |docker_bioconductor-watermelon| image:: https://quay.io/repository/biocontainers/bioconductor-watermelon/status :target: https://quay.io/repository/biocontainers/bioconductor-watermelon .. _`bioconductor-watermelon/tags`: https://quay.io/repository/biocontainers/bioconductor-watermelon?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-watermelon/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bioconductor-watermelon/README.html