:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'bioconductor-weitrix'
.. highlight: bash

bioconductor-weitrix
====================

.. conda:recipe:: bioconductor-weitrix
   :replaces_section_title:
   :noindex:

   Tools for matrices with precision weights\, test and explore weighted or sparse data

   :homepage: https://bioconductor.org/packages/3.18/bioc/html/weitrix.html
   :license: LGPL-2.1 | file LICENSE
   :recipe: /`bioconductor-weitrix <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-weitrix>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-weitrix/meta.yaml>`_

   Data type and tools for working with matrices having precision weights and missing data. This package provides a common representation and tools that can be used with many types of high\-throughput data. The meaning of the weights is compatible with usage in the base R function \"lm\" and the package \"limma\". Calibrate weights to account for known predictors of precision. Find rows with excess variability. Perform differential testing and find rows with the largest confident differences. Find PCA\-like components of variation even with many missing values\, rotated so that individual components may be meaningfully interpreted. DelayedArray matrices and BiocParallel are supported.


.. conda:package:: bioconductor-weitrix

   |downloads_bioconductor-weitrix| |docker_bioconductor-weitrix|

   :versions:
      
      

      ``1.14.0-0``,  ``1.12.0-0``,  ``1.10.0-0``,  ``1.6.0-0``,  ``1.4.0-0``,  ``1.2.0-1``,  ``1.2.0-0``,  ``1.0.0-0``

      

   
   :depends bioconductor-biocgenerics: ``>=0.48.0,<0.49.0``
   :depends bioconductor-biocparallel: ``>=1.36.0,<1.37.0``
   :depends bioconductor-delayedarray: ``>=0.28.0,<0.29.0``
   :depends bioconductor-delayedmatrixstats: ``>=1.24.0,<1.25.0``
   :depends bioconductor-limma: ``>=3.58.0,<3.59.0``
   :depends bioconductor-s4vectors: ``>=0.40.0,<0.41.0``
   :depends bioconductor-summarizedexperiment: ``>=1.32.0,<1.33.0``
   :depends bioconductor-topconfects: ``>=1.18.0,<1.19.0``
   :depends r-assertthat: 
   :depends r-base: ``>=4.3,<4.4.0a0``
   :depends r-ckmeans.1d.dp: 
   :depends r-dplyr: 
   :depends r-ggplot2: 
   :depends r-glm2: 
   :depends r-purrr: 
   :depends r-reshape2: 
   :depends r-rhpcblasctl: 
   :depends r-rlang: 
   :depends r-scales: 
   :requirements:

   .. rubric:: Installation

  You need a conda-compatible package manager
  (currently either `micromamba <https://mamba.readthedocs.io>`_, `mamba <https://mamba.readthedocs.io>`_, or `conda <https://docs.conda.io/projects/conda>`_)
  and the Bioconda channel already activated (see :ref:`set-up-channels`).

  While any of above package managers is fine, it is currently recommended to use either
  micromamba or mamba (see `here <https://mamba.readthedocs.io>`_ for installation instructions).
  We will show all commands using mamba below, but the arguments are the same for the two
  others.

  Given that you already have a conda environment in which you want to have this package, install with::

      mamba install bioconductor-weitrix

   and update with::

      mamba update bioconductor-weitrix

  To create a new environment, run::

      mamba create --name myenvname bioconductor-weitrix

  with ``myenvname`` being a reasonable name for the environment
  (see e.g. the `mamba docs <https://mamba.readthedocs.io>`_ for details and further options).

  Alternatively, use the docker container::

      docker pull quay.io/biocontainers/bioconductor-weitrix:<tag>

   (see `bioconductor-weitrix/tags`_ for valid values for ``<tag>``)


.. |downloads_bioconductor-weitrix| image:: https://img.shields.io/conda/dn/bioconda/bioconductor-weitrix.svg?style=flat
   :target: https://anaconda.org/bioconda/bioconductor-weitrix
   :alt:   (downloads)
.. |docker_bioconductor-weitrix| image:: https://quay.io/repository/biocontainers/bioconductor-weitrix/status
   :target: https://quay.io/repository/biocontainers/bioconductor-weitrix
.. _`bioconductor-weitrix/tags`: https://quay.io/repository/biocontainers/bioconductor-weitrix?tab=tags


.. raw:: html

    <script>
        var package = "bioconductor-weitrix";
        var versions = ["1.14.0","1.12.0","1.10.0","1.6.0","1.4.0"];
    </script>






Download stats
-----------------

.. raw:: html
    :file: ../../templates/package_dashboard.html

Link to this page
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Render an |install-with-bioconda| badge with the following MarkDown::

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.. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat
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