:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'blockclust' .. highlight: bash blockclust ========== .. conda:recipe:: blockclust :replaces_section_title: :noindex: Efficient clustering and classification of non\-coding RNAs from short read RNA\-seq profiles. :homepage: https://github.com/pavanvidem/blockclust :license: GPL2 / GPL-2.0-or-later :recipe: /`blockclust `_/`meta.yaml `_ :links: doi: :doi:`10.1093/bioinformatics/btu270` .. conda:package:: blockclust |downloads_blockclust| |docker_blockclust| :versions: .. raw:: html
1.1.1-01.1.0-91.1.0-81.1.0-71.1.0-61.1.0-51.1.0-41.1.0-31.1.0-2 ``1.1.1-0``,  ``1.1.0-9``,  ``1.1.0-8``,  ``1.1.0-7``,  ``1.1.0-6``,  ``1.1.0-5``,  ``1.1.0-4``,  ``1.1.0-3``,  ``1.1.0-2``,  ``1.1.0-1``,  ``1.1.0-0`` .. raw:: html
:depends cloudpickle: ``0.5.6.*`` :depends eden: ``1.1.*`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :depends mcl: ``>=14.137`` :depends pysam: ``>=0.15.0`` :depends python: ``>=3.10,<3.11.0a0`` :depends python_abi: ``3.10.* *_cp310`` :depends r-base: ``>=4.3,<4.4.0a0`` :depends r-dendextend: ``>=1.8.0`` :depends scikit-learn: ``>=0.20.0`` :depends wget: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install blockclust and update with:: mamba update blockclust To create a new environment, run:: mamba create --name myenvname blockclust with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/blockclust: (see `blockclust/tags`_ for valid values for ````) .. |downloads_blockclust| image:: https://img.shields.io/conda/dn/bioconda/blockclust.svg?style=flat :target: https://anaconda.org/bioconda/blockclust :alt: (downloads) .. |docker_blockclust| image:: https://quay.io/repository/biocontainers/blockclust/status :target: https://quay.io/repository/biocontainers/blockclust .. _`blockclust/tags`: https://quay.io/repository/biocontainers/blockclust?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/blockclust/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/blockclust/README.html