:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bowtie2' .. highlight: bash bowtie2 ======= .. conda:recipe:: bowtie2 :replaces_section_title: :noindex: Fast and sensitive gapped read alignment :homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml :license: GPL-3.0-only :recipe: /`bowtie2 `_/`meta.yaml `_ :links: biotools: :biotools:`bowtie2`, doi: :doi:`10.1038/nmeth.1923`, debian: :debian:`bowtie2`, usegalaxy-eu: :usegalaxy-eu:`bowtie2` .. conda:package:: bowtie2 |downloads_bowtie2| |docker_bowtie2| :versions: .. raw:: html
2.4.5-22.4.5-12.4.5-02.4.4-12.4.4-02.4.3-02.4.2-22.4.2-12.4.2-0 ``2.4.5-2``,  ``2.4.5-1``,  ``2.4.5-0``,  ``2.4.4-1``,  ``2.4.4-0``,  ``2.4.3-0``,  ``2.4.2-2``,  ``2.4.2-1``,  ``2.4.2-0``,  ``2.4.1-3``,  ``2.4.1-2``,  ``2.4.1-1``,  ``2.4.1-0``,  ``2.3.5.1-0``,  ``2.3.5-0``,  ``2.3.4.3-1``,  ``2.3.4.3-0``,  ``2.3.4.2-0``,  ``2.3.4.1-1``,  ``2.3.4.1-0``,  ``2.3.4-0``,  ``2.3.3.1-0``,  ``2.3.2-1``,  ``2.3.0-1``,  ``2.3.0-0``,  ``2.2.8-2``,  ``2.2.8-1``,  ``2.2.8-0``,  ``2.2.7-1``,  ``2.2.7-0``,  ``2.2.6-0``,  ``2.2.5-8``,  ``2.2.5-7``,  ``2.2.5-6``,  ``2.2.5-5``,  ``2.2.5-4``,  ``2.2.5-3``,  ``2.2.5-2``,  ``2.2.5-1``,  ``2.2.4-8``,  ``2.2.4-7``,  ``2.2.4-6``,  ``2.2.4-5``,  ``2.2.4-4``,  ``2.2.4-3``,  ``2.2.4-2``,  ``2.2.4-1``,  ``2.2.4-0``,  ``2.2.1-5``,  ``2.2.1-4``,  ``2.2.1-3``,  ``2.2.1-2``,  ``2.2.1-1``,  ``2.2.1-0`` .. raw:: html
:depends libgcc-ng: ``>=10.3.0`` :depends libstdcxx-ng: ``>=10.3.0`` :depends libzlib: ``>=1.2.11,<1.3.0a0`` :depends perl: :depends python: ``>=3.6,<3.7.0a0`` :depends python_abi: ``3.6.* *_cp36m`` :depends tbb: ``>=2020.2,<2021.0.0a0`` :depends zlib: ``>=1.2.11,<1.3.0a0`` :depends zstd: ``>=1.5.2,<1.6.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install bowtie2 and update with:: conda update bowtie2 or use the docker container:: docker pull quay.io/biocontainers/bowtie2: (see `bowtie2/tags`_ for valid values for ````) .. |downloads_bowtie2| image:: https://img.shields.io/conda/dn/bioconda/bowtie2.svg?style=flat :target: https://anaconda.org/bioconda/bowtie2 :alt: (downloads) .. |docker_bowtie2| image:: https://quay.io/repository/biocontainers/bowtie2/status :target: https://quay.io/repository/biocontainers/bowtie2 .. _`bowtie2/tags`: https://quay.io/repository/biocontainers/bowtie2?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bowtie2/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bowtie2/README.html