:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'bs_call' .. highlight: bash bs_call ======= .. conda:recipe:: bs_call :replaces_section_title: :noindex: DNA methylation and variant Caller for Bisulfite Sequencing Data. :homepage: https://github.com/heathsc/bs_call :license: GPL-3.0 :recipe: /`bs_call `_/`meta.yaml `_ :links: doi: :doi:`10.1101/201988` .. conda:package:: bs_call |downloads_bs_call| |docker_bs_call| :versions: ``2.02-8``,  ``2.02-7``,  ``2.02-6``,  ``2.02-5``,  ``2.02-4``,  ``2.02-3``,  ``2.02-2``,  ``2.02-1``,  ``2.02-0`` :depends bzip2: ``>=1.0.8,<2.0a0`` :depends gsl: ``>=2.7,<2.8.0a0`` :depends libgcc-ng: ``>=12`` :depends libzlib: ``>=1.2.13,<1.3.0a0`` :depends openmp: :depends zlib: :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install bs_call and update with:: mamba update bs_call To create a new environment, run:: mamba create --name myenvname bs_call with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/bs_call: (see `bs_call/tags`_ for valid values for ````) .. |downloads_bs_call| image:: https://img.shields.io/conda/dn/bioconda/bs_call.svg?style=flat :target: https://anaconda.org/bioconda/bs_call :alt: (downloads) .. |docker_bs_call| image:: https://quay.io/repository/biocontainers/bs_call/status :target: https://quay.io/repository/biocontainers/bs_call .. _`bs_call/tags`: https://quay.io/repository/biocontainers/bs_call?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bs_call/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/bs_call/README.html