:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cadd-scripts' .. highlight: bash cadd-scripts ============ .. conda:recipe:: cadd-scripts :replaces_section_title: :noindex: CADD scripts release for offline scoring :homepage: https://github.com/kircherlab/CADD-scripts :license: Restricted. Free for non-commercial users. :recipe: /`cadd-scripts `_/`meta.yaml `_ This package contains the CADD\-scripts. Please note that the \"CADD.sh\" script is available as \"cadd.sh\" while the \"install.sh\" script is available as \"cadd\-install.sh\". The \"Prerequisite\" steps from the CADD\-scripts repository README can be skipped as you already have conda installed with the proper channels if you can install this package and this package depends on the proper Snakemake version. .. conda:package:: cadd-scripts |downloads_cadd-scripts| |docker_cadd-scripts| :versions: ``1.7-0``,  ``1.6.post1-0``,  ``1.6-1``,  ``1.6-0`` :depends snakemake: ``>=4.0`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cadd-scripts and update with:: mamba update cadd-scripts To create a new environment, run:: mamba create --name myenvname cadd-scripts with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cadd-scripts: (see `cadd-scripts/tags`_ for valid values for ````) .. |downloads_cadd-scripts| image:: https://img.shields.io/conda/dn/bioconda/cadd-scripts.svg?style=flat :target: https://anaconda.org/bioconda/cadd-scripts :alt: (downloads) .. |docker_cadd-scripts| image:: https://quay.io/repository/biocontainers/cadd-scripts/status :target: https://quay.io/repository/biocontainers/cadd-scripts .. _`cadd-scripts/tags`: https://quay.io/repository/biocontainers/cadd-scripts?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cadd-scripts/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cadd-scripts/README.html