:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'cd-hit-auxtools' .. highlight: bash cd-hit-auxtools =============== .. conda:recipe:: cd-hit-auxtools :replaces_section_title: :noindex: Clusters and compares protein or nucleotide sequences :homepage: https://github.com/weizhongli/cdhit :license: GPLv2 :recipe: /`cd-hit-auxtools `_/`meta.yaml `_ .. conda:package:: cd-hit-auxtools |downloads_cd-hit-auxtools| |docker_cd-hit-auxtools| :versions: ``4.8.1-3``,  ``4.8.1-2``,  ``4.8.1-1``,  ``4.8.1-0``,  ``4.6.8-2``,  ``4.6.8-1``,  ``4.6.8-0`` :depends libgcc-ng: ``>=12`` :depends libstdcxx-ng: ``>=12`` :requirements: .. rubric:: Installation You need a conda-compatible package manager (currently either `micromamba `_, `mamba `_, or `conda `_) and the Bioconda channel already activated (see :ref:`set-up-channels`). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see `here `_ for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others. Given that you already have a conda environment in which you want to have this package, install with:: mamba install cd-hit-auxtools and update with:: mamba update cd-hit-auxtools To create a new environment, run:: mamba create --name myenvname cd-hit-auxtools with ``myenvname`` being a reasonable name for the environment (see e.g. the `mamba docs `_ for details and further options). Alternatively, use the docker container:: docker pull quay.io/biocontainers/cd-hit-auxtools: (see `cd-hit-auxtools/tags`_ for valid values for ````) .. |downloads_cd-hit-auxtools| image:: https://img.shields.io/conda/dn/bioconda/cd-hit-auxtools.svg?style=flat :target: https://anaconda.org/bioconda/cd-hit-auxtools :alt: (downloads) .. |docker_cd-hit-auxtools| image:: https://quay.io/repository/biocontainers/cd-hit-auxtools/status :target: https://quay.io/repository/biocontainers/cd-hit-auxtools .. _`cd-hit-auxtools/tags`: https://quay.io/repository/biocontainers/cd-hit-auxtools?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cd-hit-auxtools/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/cd-hit-auxtools/README.html