:orphan: .. only available via index, not via toctree .. title:: Package Recipe 'centrifuge' .. highlight: bash centrifuge ========== .. conda:recipe:: centrifuge :replaces_section_title: :noindex: Classifier for metagenomic sequences. :homepage: https://github.com/infphilo/centrifuge :license: GPL3 :recipe: /`centrifuge `_/`meta.yaml `_ :links: biotools: :biotools:`Centrifuge`, doi: :doi:`10.1101/gr.210641.116` .. conda:package:: centrifuge |downloads_centrifuge| |docker_centrifuge| :versions: .. raw:: html
1.0.4_beta-61.0.4_beta-51.0.4_beta-41.0.4_beta-31.0.4_beta-21.0.4_beta-01.0.3-31.0.3-21.0.3-1 ``1.0.4_beta-6``,  ``1.0.4_beta-5``,  ``1.0.4_beta-4``,  ``1.0.4_beta-3``,  ``1.0.4_beta-2``,  ``1.0.4_beta-0``,  ``1.0.3-3``,  ``1.0.3-2``,  ``1.0.3-1``,  ``1.0.3-0`` .. raw:: html
:depends libgcc-ng: ``>=9.3.0`` :depends libstdcxx-ng: ``>=9.3.0`` :depends perl: :depends python: ``<3`` :depends tar: :depends wget: :depends zlib: ``>=1.2.11,<1.3.0a0`` :requirements: .. rubric:: Installation With an activated Bioconda channel (see :ref:`set-up-channels`), install with:: conda install centrifuge and update with:: conda update centrifuge or use the docker container:: docker pull quay.io/biocontainers/centrifuge: (see `centrifuge/tags`_ for valid values for ````) .. |downloads_centrifuge| image:: https://img.shields.io/conda/dn/bioconda/centrifuge.svg?style=flat :target: https://anaconda.org/bioconda/centrifuge :alt: (downloads) .. |docker_centrifuge| image:: https://quay.io/repository/biocontainers/centrifuge/status :target: https://quay.io/repository/biocontainers/centrifuge .. _`centrifuge/tags`: https://quay.io/repository/biocontainers/centrifuge?tab=tags .. raw:: html Download stats ----------------- .. raw:: html :file: ../../templates/package_dashboard.html Link to this page ----------------- Render an |install-with-bioconda| badge with the following MarkDown:: [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/centrifuge/README.html) .. |install-with-bioconda| image:: https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat :target: http://bioconda.github.io/recipes/centrifuge/README.html