:orphan:  .. only available via index, not via toctree

.. title:: Package Recipe 'centrifuge'
.. highlight: bash

centrifuge
==========

.. conda:recipe:: centrifuge
   :replaces_section_title:

   Classifier for metagenomic sequences.

   :homepage: https://github.com/infphilo/centrifuge
   :license: GPL3
   :recipe: /`centrifuge <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/centrifuge>`_/`meta.yaml <https://github.com/bioconda/bioconda-recipes/tree/master/recipes/centrifuge/meta.yaml>`_
   :links: biotools: :biotools:`Centrifuge`, doi: :doi:`10.1101/gr.210641.116`

   


.. conda:package:: centrifuge

   |downloads_centrifuge| |docker_centrifuge|

   :versions: 1.0.4_beta-2, 1.0.4_beta-0, 1.0.3-3, 1.0.3-2, 1.0.3-1, 1.0.3-0
   
   :depends libstdcxx-ng: >=4.9
   :depends perl: >=5.26.2,<5.27.0a0
   :depends python: >=2.7,<2.8.0a0
   :depends zlib: >=1.2.11,<1.3.0a0
   :requirements:

   .. rubric:: Installation

   With an activated Bioconda channel (see :ref:`set-up-channels`), install with::

      conda install centrifuge

   and update with::

      conda update centrifuge

   or use the docker container::

      docker pull quay.io/biocontainers/centrifuge:<tag>

   (see `centrifuge/tags`_ for valid values for ``<tag>``)


.. |downloads_centrifuge| image:: https://img.shields.io/conda/dn/bioconda/centrifuge.svg?style=flat
   :alt:   (downloads)
.. |docker_centrifuge| image:: https://quay.io/repository/biocontainers/centrifuge/status
   :target: https://quay.io/repository/biocontainers/centrifuge
.. _`centrifuge/tags`: https://quay.io/repository/biocontainers/centrifuge?tab=tags







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